Genetics

Latest AI and machine learning research in genetics for healthcare professionals.

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Showing 3341-3360 of 14,214 articles

Variant calling from RNA-Seq data reveals allele-specific differential expression of pathogenic cancer variants.

BACKGROUND: Genetic variants play a pivotal role in the initiation and progression of many diseases, including cancer. Detecting these variants is the first step in understanding their contribution to disease mechanisms. RNA sequencing (RNA-Seq) has become a crucial assay in cancer research, offering insights beyond those provided by DNA sequencing. This study introduces VarRNA, a novel method tha...

May 28 2025 40437029

Single-cell data combined with phenotypes improves variant interpretation.

BACKGROUND: Whole genome sequencing offers significant potential to improve the diagnosis and treatment of rare diseases by enabling the identification of thousands of rare, potentially pathogenic variants. Existing variant prioritisation tools can be complemented by approaches that incorporate phenotype specificity and provide contextual biological information, such as tissue or cell-type specifi...

May 28 2025 40437370
Integrating genome editing with omics, artificial intelligence and advanced farming technologies to increase crop productivity.

Celebrated for boosting agricultural productivity and enhancing food security worldwide, the green revolution constituted some of the most significant...

May 28 2025 40443034
PhenoLinker: Phenotype-gene link prediction and explanation using heterogeneous graph neural networks.

The association of a given human phenotype with a genetic variant remains a critical challenge in biomedical research. We present PhenoLinker, a novel...

May 28 2025 40446589
Prediction of treatment efficacy in the suanzaoren decoction and estazolam for chronic insomnia disorder, along with brain function and cognitive changes before and after treatment, and potential gene expression profiles.

OBJECTIVE: This study compared the brain function changes in chronic insomnia disorder (CID) before and after treatment by suanzaoren decoction (SZRD)...

May 28 2025 40482291
Topological Machine Learning for Protein-Nucleic Acid Binding Affinity Changes Upon Mutation.

Understanding how protein mutations affect protein-nucleic acid binding is critical for unraveling disease mechanisms and advancing therapies. Current...

May 28 2025 40492245
Error Reduction in Leukemia Machine Learning Classification With Conformal Prediction.

PURPOSE: Recent advances in machine learning have led to the development of classifiers that predict molecular subtypes of acute lymphoblastic leukemi...

May 28 2025 40435436
The Role of PANoptosis-Related Genes in Predicting Breast Cancer Survival and Immune Prospect.

The function of PANoptosis in breast cancer (BC) remains indistinct. We constructed a nomogram model to predict the prognosis of BC to identify high-...

May 28 2025 40469997
Diagnosis and management of Candida endophthalmitis and chorioretinitis.

BACKGROUND: Candida endophthalmitis (CE) and chorioretinitis are uncommon but potentially devastating complications of candidemia, associated with sig...

May 27 2025 40441350
Hypertension precision medicine: the promise and pitfalls of pharmacogenomics.

Pharmacogenomics (PGx) has the potential to revolutionize hypertension management by tailoring antihypertensive therapy based on genetic profiles. Des...

May 27 2025 40421951
Compositional Physical Reasoning of Objects and Events from Videos.

Understanding and reasoning about objects' physical properties in the natural world is a fundamental challenge in artificial intelligence. While some ...

May 27 2025 40424100
Diversity of U1 Small Nuclear RNAs and Diagnostic Methods for Their Mutations.

U1 small nuclear RNA (snRNA) mutations are recurrent non-coding alterations found in various malignancies, yet their identification has proven challen...

May 27 2025 40425278
scE2EGAE: enhancing single-cell RNA-Seq data analysis through an end-to-end cell-graph-learnable graph autoencoder with differentiable edge sampling.

BACKGROUND: Single-cell RNA sequencing (scRNA-Seq) technology reveals biological processes and molecular-level genomic information among individual ce...

May 27 2025 40426257
[Progress of individualized precision therapy for peritoneal metastasis in gastric cancer].

Peritoneal metastasis represents the most aggressive form of gastric cancer metastasis and serves as a primary contributor to poor prognosis. Conventi...

May 27 2025 40443328
Baseline Radiomics as a Prognostic Tool for Clinical Benefit from Immune Checkpoint Inhibition in Inoperable NSCLC Without Activating Mutations.

Checkpoint inhibitors (ICIs) are key therapies for NSCLC, but current selection criteria, such as excluding mutation carriers and assessing PD-L1, la...

May 27 2025 40507271
Deep learning architectures for influenza dynamics and treatment optimization: a comprehensive review.

As a major worldwide health concern, influenza still requires precise modeling of flu dynamics and efficient treatment approaches. Deep learning archi...

May 27 2025 40495931
Optimizing phage therapy with artificial intelligence: a perspective.

Phage therapy is emerging as a promising strategy against the growing threat of antimicrobial resistance, yet phage and bacteria are incredibly divers...

May 27 2025 40496019
Prediction of CRISPR-Cas9 on-target activity based on a hybrid neural network.

CRISPR-Cas9 is a groundbreaking gene editing technology, but variations in targeted editing efficiency arise due to significant discrepancies in sgRNA...

May 27 2025 40502933
Mechanistic exploration of hexokinase 2 and metabolism in diabetic cardiomyopathy.

The pathogenesis of diabetic cardiomyopathy (DCM) remains incompletely understood. The present study employed weighted gene co‑expression network anal...

May 26 2025 40417885
Multi-Omics Analysis of the virulence factors and designing of next-generation multi-epitopes Vaccines against Rickettsia prowazekii: a computer-aided vaccine designing approach.

Rickettsia is a genus of bacteria that are obligate intracellular parasites and are responsible for the febrile diseases known collectively as Rickett...

May 26 2025 40418389
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