Genetics

Latest AI and machine learning research in genetics for healthcare professionals.

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Identification, characterization, and design of plant genome sequences using deep learning.

Due to its excellent performance in processing large amounts of data and capturing complex non-linear relationships, deep learning has been widely applied in many fields of plant biology. Here we first review the application of deep learning in analyzing genome sequences to predict gene expression, chromatin interactions, and epigenetic features (open chromatin, transcription factor binding sites,...

Dec 12 2024 39666835

TExCNN: Leveraging Pre-Trained Models to Predict Gene Expression from Genomic Sequences.

BACKGROUND/OBJECTIVES: Understanding the relationship between DNA sequences and gene expression levels is of significant biological importance. Recent advancements have demonstrated the ability of deep learning to predict gene expression levels directly from genomic data. However, traditional methods are limited by basic word encoding techniques, which fail to capture the inherent features and pat...

Dec 12 2024 39766860
Genotype-negative multiple endocrine neoplasia type 1 with prolactinoma, hyperparathyroidism, and subclinical Cushing's syndrome accompanied by hyperglycemia: a case report.

BACKGROUND: Multiple endocrine neoplasia type 1 (MEN1) is a rare autosomal dominant disorder, accompanied by multiple endocrine neoplasms of the parat...

Dec 12 2024 39726845
The native Iranian soil bacteria with high potential to produce extracellular methionine gamma-lyase.

This study aimed to screen native methionine gamma-lyase (L-methioninase) producing bacteria from soil samples and optimize the culture media for enha...

Dec 12 2024 39726960
The significance of long chain non-coding RNA signature genes in the diagnosis and management of sepsis patients, and the development of a prediction model.

BACKGROUND: Sepsis is a life-threatening organ dysfunction condition produced by dysregulation of the host response to infection. It is now characteri...

Dec 12 2024 39735547
Self-improving generative foundation model for synthetic medical image generation and clinical applications.

In many clinical and research settings, the scarcity of high-quality medical imaging datasets has hampered the potential of artificial intelligence (A...

Dec 11 2024 39663467
Mapping the functional network of human cancer through machine learning and pan-cancer proteogenomics.

Large-scale omics profiling has uncovered a vast array of somatic mutations and cancer-associated proteins, posing substantial challenges for their fu...

Dec 11 2024 39663389
Role of artificial intelligence in cancer detection using protein p53: A Review.

Normal cell development and prevention of tumor formation rely on the tumor-suppressor protein p53. This crucial protein is produced from the Tp53 gen...

Dec 11 2024 39658610
Towards AI-designed genomes using a variational autoencoder.

Genomes encode elaborate networks of genes whose products must seamlessly interact to support living organisms. Humans' capacity to understand these b...

Dec 11 2024 39657811
A Multi-Task Deep Feature Selection Method for Brain Imaging Genetics.

Using brain imaging quantitative traits (QTs) for identifying genetic risk factors is an important research topic in brain imaging genetics. Many effo...

Dec 10 2024 37432805
Transcription Factor Binding Site Prediction Using CnNet Approach.

Controlling the gene expression is the most important development in a living organism, which makes it easier to find different kinds of diseases and ...

Dec 10 2024 38848239
Ense-i6mA: Identification of DNA N-Methyladenine Sites Using XGB-RFE Feature Selection and Ensemble Machine Learning.

DNA N-methyladenine (6mA) is an important epigenetic modification that plays a vital role in various cellular processes. Accurate identification of th...

Dec 10 2024 38949938
GenoM7GNet: An Efficient N-Methylguanosine Site Prediction Approach Based on a Nucleotide Language Model.

N-methylguanosine (m7G), one of the mainstream post-transcriptional RNA modifications, occupies an exceedingly significant place in medical treatments...

Dec 10 2024 39302806
An End-to-End Knowledge Graph Fused Graph Neural Network for Accurate Protein-Protein Interactions Prediction.

Protein-protein interactions (PPIs) are essential to understanding cellular mechanisms, signaling networks, disease processes, and drug development, a...

Dec 10 2024 39446541
Automatic identification of clinically important species by artificial intelligence-based image recognition: proof-of-concept study.

While morphological examination is the most widely used for identification in clinical laboratories, PCR-sequencing and MALDI-TOF MS are emerging tec...

Dec 9 2024 39585232
FertilitY Predictor-a machine learning-based web tool for the prediction of assisted reproduction outcomes in men with Y chromosome microdeletions.

PURPOSE: Y chromosome microdeletions (YCMD) are a common cause of azoospermia and oligozoospermia in men. Herein, we developed a machine learning-base...

Dec 9 2024 39652237
Genomic analysis, culturing optimization, and characterization of bacteriophage OSYSP, previously studied as effective pathogen control on fresh produce.

Advances in bacteriophage genome sequencing and regulatory approvals of some bacteriophages in various applications have renewed interest in these ant...

Dec 9 2024 39717272
Neurodegeneration: 2024 update.

This review highlights a collection of both diverse and highly impactful studies published in the previous year selected by the author from the neurod...

Dec 9 2024 39823116
Self-distillation improves self-supervised learning for DNA sequence inference.

Self-supervised Learning (SSL) has been recognized as a method to enhance prediction accuracy in various downstream tasks. However, its efficacy for D...

Dec 7 2024 39667220
DRGAT: Predicting Drug Responses Via Diffusion-Based Graph Attention Network.

Accurately predicting drug response depending on a patient's genomic profile is critical for advancing personalized medicine. Deep learning approaches...

Dec 6 2024 39639802
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