Genetics

Latest AI and machine learning research in genetics for healthcare professionals.

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A Support Vector Machine based method to distinguish long non-coding RNAs from protein coding transcripts.

BACKGROUND: In recent years, a rapidly increasing number of RNA transcripts has been generated by thousands of sequencing projects around the world, creating enormous volumes of transcript data to be analyzed. An important problem to be addressed when analyzing this data is distinguishing between long non-coding RNAs (lncRNAs) and protein coding transcripts (PCTs). Thus, we present a Support Vecto...

Oct 18 2017 29047334

Occurrence and characteristics of extended-spectrum β-lactamase- and carbapenemase- producing bacteria from hospital effluents in Singapore.

One of the most important resistance mechanisms in Gram-negative bacteria today is the production of enzymes causing resistance to cephalosporin and carbapenem antibiotics. The spread of extended-spectrum β-lactamases (ESBL)- and carbapenemase- producing Gram-negative bacteria is an emerging global public health problem. The aim of the present study was to (i) assess the prevalence of carbapenem-r...

Oct 17 2017 29751417
A novel machine learning approach reveals latent vascular phenotypes predictive of renal cancer outcome.

Gene expression signatures are commonly used as predictive biomarkers, but do not capture structural features within the tissue architecture. Here we ...

Oct 16 2017 29038551
Phylogeny analysis from gene-order data with massive duplications.

BACKGROUND: Gene order changes, under rearrangements, insertions, deletions and duplications, have been used as a new type of data source for phylogen...

Oct 16 2017 29513196
A machine learning approach for predicting CRISPR-Cas9 cleavage efficiencies and patterns underlying its mechanism of action.

The adaptation of the CRISPR-Cas9 system as a genome editing technique has generated much excitement in recent years owing to its ability to manipulat...

Oct 16 2017 29036168
Hyperinsulinemia and Insulin Receptor Gene Mutation in Nonobese Healthy Subjects in Japan.

CONTEXT: Hyperinsulinemia is often observed in obese people, owing to their insulin resistance accompanied by visceral fat accumulation, but the frequ...

Oct 12 2017 29264459
PICKLE 2.0: A human protein-protein interaction meta-database employing data integration via genetic information ontology.

It has been acknowledged that source databases recording experimentally supported human protein-protein interactions (PPIs) exhibit limited overlap. T...

Oct 12 2017 29023571
Digging deep into Golgi phenotypic diversity with unsupervised machine learning.

The synthesis of glycans and the sorting of proteins are critical functions of the Golgi apparatus and depend on its highly complex and compartmentali...

Oct 11 2017 29021342
DNA Implementation of Fuzzy Inference Engine: Towards DNA Decision-Making Systems.

Decision-making systems are an integral part of any autonomous device. With the recent developments in bio-nanorobots, smart drugs, and engineered vir...

Oct 9 2017 28991747
Multiobjective differential evolution-based multifactor dimensionality reduction for detecting gene-gene interactions.

Epistasis within disease-related genes (gene-gene interactions) was determined through contingency table measures based on multifactor dimensionality ...

Oct 9 2017 28993686
Deep Learning-Based Multi-Omics Integration Robustly Predicts Survival in Liver Cancer.

Identifying robust survival subgroups of hepatocellular carcinoma (HCC) will significantly improve patient care. Currently, endeavor of integrating mu...

Oct 5 2017 28982688
The folded k-spectrum kernel: A machine learning approach to detecting transcription factor binding sites with gapped nucleotide dependencies.

Understanding the molecular machinery involved in transcriptional regulation is central to improving our knowledge of an organism's development, disea...

Oct 5 2017 28982128
Patchy promiscuity: machine learning applied to predict the host specificity of and .

and are bacterial species that colonize different animal hosts with sub-types that can cause life-threatening infections in humans. Source attributi...

Oct 3 2017 29177093
Identification of potentially oncogenic alterations from tumor-only samples reveals Fanconi anemia pathway mutations in bladder carcinomas.

Cancer is caused by germline and somatic mutations, which can share biological features such as amino acid change. However, integrated germline and so...

Oct 3 2017 29263839
Upgrade Combination Response Is Limited by Prolonged Nucelos(t)ide Analogue Therapy in HBeAg-positive Chronic Hepatitis B: A Real-life Study.

Few previous studies have reported on a combination response (hepatitis B virus (HBV) DNA undetected, alanine aminotransferase normalization and hepa...

Sep 30 2017 29577027
Protracted severe systemic cytomegalovirus disease in an immunosuppressed patient with ulcerative colitis.

A 33-year-old man with ulcerative colitis presented with 5-day history of fever, night sweats, abdominal pain and increased stool frequency. He was on...

Sep 29 2017 29588843
Single Nucleotide Polymorphism relevance learning with Random Forests for Type 2 diabetes risk prediction.

OBJECTIVE: The use of artificial intelligence techniques to find out which Single Nucleotide Polymorphisms (SNPs) promote the development of a disease...

Sep 22 2017 28943335
NetGen: a novel network-based probabilistic generative model for gene set functional enrichment analysis.

BACKGROUND: High-throughput experimental techniques have been dramatically improved and widely applied in the past decades. However, biological interp...

Sep 21 2017 28950861
Investigations on factors influencing HPO-based semantic similarity calculation.

BACKGROUND: Although disease diagnosis has greatly benefited from next generation sequencing technologies, it is still difficult to make the right dia...

Sep 20 2017 29297376
Predicting clinical outcomes from large scale cancer genomic profiles with deep survival models.

Translating the vast data generated by genomic platforms into accurate predictions of clinical outcomes is a fundamental challenge in genomic medicine...

Sep 15 2017 28916782
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