Genetics

Latest AI and machine learning research in genetics for healthcare professionals.

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MeSH-Informed Enrichment Analysis and MeSH-Guided Semantic Similarity Among Functional Terms and Gene Products in Chicken.

Biomedical vocabularies and ontologies aid in recapitulating biological knowledge. The annotation of gene products is mainly accelerated by Gene Ontology (GO), and more recently by Medical Subject Headings (MeSH). Here, we report a suite of MeSH packages for chicken in Bioconductor, and illustrate some features of different MeSH-based analyses, including MeSH-informed enrichment analysis and MeSH-...

Aug 9 2016 27261003

Clustering of soybean genotypes via Ward-MLM and ANNs associated with mixed models.

The objectives of this study were to use mixed models to confirm the presence of genetic variability in 16 soybean genotypes, to compare clusters generated by artificial neural networks (ANNs) with those created by the Ward modified location model (MLM) technique, and to indicate parental combinations that hold promise for obtaining superior segregating populations of soybean. A field trial was co...

Aug 5 2016 27525912
Opening up the blackbox: an interpretable deep neural network-based classifier for cell-type specific enhancer predictions.

BACKGROUND: Gene expression is mediated by specialized cis-regulatory modules (CRMs), the most prominent of which are called enhancers. Early experime...

Aug 1 2016 27490187
eSNPO: An eQTL-based SNP Ontology and SNP functional enrichment analysis platform.

Genome-wide association studies (GWASs) have mined many common genetic variants associated with human complex traits like diseases. After that, the fu...

Jul 29 2016 27470167
Teaching artificial intelligence to read electropherograms.

Electropherograms are produced in great numbers in forensic DNA laboratories as part of everyday criminal casework. Before the results of these electr...

Jul 28 2016 27491066
Switched Fuzzy-PD Control of Contact Forces in Robotic Microbiomanipulation.

Force sensing and control are of paramount importance in robotic micromanipulation. A contact force regulator capable of accurately applying mechanica...

Jul 26 2016 27479953
Gene expression classification using epigenetic features and DNA sequence composition in the human embryonic stem cell line H1.

Epigenetic factors are known to correlate with gene expression in the existing studies. However, quantitative models that accurately classify the high...

Jul 25 2016 27468948
Breast cancer-associated high-order SNP-SNP interaction of CXCL12/CXCR4-related genes by an improved multifactor dimensionality reduction (MDR-ER).

In association studies, the combined effects of single nucleotide polymorphism (SNP)-SNP interactions and the problem of imbalanced data between cases...

Jul 21 2016 27461876
Fabrication of an electrochemical sensor for determination of doxorubicin in human plasma and its interaction with DNA.

In this work, an electrochemical sensor was fabricated for determination of an anthracycline, doxorubicin (DOX) as a chemotherapy drug in plasma based...

Jul 19 2016 29404015
Radiation Dose Estimation by Automated Cytogenetic Biodosimetry.

The dose from ionizing radiation exposure can be interpolated from a calibration curve fit to the frequency of dicentric chromosomes (DCs) at multiple...

Jul 13 2016 27412514
The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins.

Genomics, epigenomics, transcriptomics, proteomics and metabolomics efforts rapidly generate a plethora of data on the activity and levels of biomolec...

Jul 3 2016 27374120
gDNA-Prot: Predict DNA-binding proteins by employing support vector machine and a novel numerical characterization of protein sequence.

DNA-binding proteins are the functional proteins in cells, which play an important role in various essential biological activities. An effective and f...

Jul 1 2016 27378005
Logic Learning Machine and standard supervised methods for Hodgkin's lymphoma prognosis using gene expression data and clinical variables.

This study evaluates the performance of a set of machine learning techniques in predicting the prognosis of Hodgkin's lymphoma using clinical factors ...

Jun 27 2016 27354395
Dynamic regulation of RNA editing in human brain development and disease.

RNA editing is increasingly recognized as a molecular mechanism regulating RNA activity and recoding proteins. Here we surveyed the global landscape o...

Jun 27 2016 27348216
Ensemble Feature Learning of Genomic Data Using Support Vector Machine.

The identification of a subset of genes having the ability to capture the necessary information to distinguish classes of patients is crucial in bioin...

Jun 15 2016 27304923
tarSVM: Improving the accuracy of variant calls derived from microfluidic PCR-based targeted next generation sequencing using a support vector machine.

BACKGROUND: Targeted sequencing of discrete gene sets is a cost effective strategy to screen subjects for monogenic forms of disease. One method to ac...

Jun 10 2016 27287006
A knowledge base for tracking the impact of genomics on population health.

PURPOSE: We created an online knowledge base (the Public Health Genomics Knowledge Base (PHGKB)) to provide systematically curated and updated informa...

Jun 9 2016 27280867
A knowledge-based approach for predicting gene-disease associations.

MOTIVATION: Recent advances of next-generation sequence technologies have made it possible to rapidly and inexpensively identify gene variations. Know...

Jun 9 2016 27283949
Protease Inhibitors in View of Peptide Substrate Databases.

Protease substrate profiling has nowadays almost become a routine task for experimentalists, and the knowledge on protease peptide substrates is easil...

Jun 9 2016 27247997
Antifungal activity of Momordica charantia seed extracts toward the pathogenic fungus Fusarium solani L.

Momordica charantia L., a vegetable crop with high nutritional value, has been used as an antimutagenic, antihelminthic, anticancer, antifertility, an...

Jun 2 2016 28911628
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