Genetics

Latest AI and machine learning research in genetics for healthcare professionals.

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Hyperspectral Anomaly Detection Fused Unified Nonconvex Tensor Ring Factors Regularization

In recent years, tensor decomposition-based approaches for hyperspectral anomaly detection (HAD) have gained significant attention in the field of remote sensing. However, existing methods often fail to fully leverage both the global correlations and local smoothness of the background components in hyperspectral images (HSIs), which exist in both the spectral and spatial domains. This limitation...

Scaling Image and Video Generation via Test-Time Evolutionary Search

As the marginal cost of scaling computation (data and parameters) during model pre-training continues to increase substantially, test-time scaling (TTS) has emerged as a promising direction for improving generative model performance by allocating additional computation at inference time. While TTS has demonstrated significant success across multiple language tasks, there remains a notable gap in...

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing

De novo peptide sequencing is a critical task in proteomics. However, the performance of current deep learning-based methods is limited by the inher...

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing

De novo peptide sequencing is a critical task in proteomics. However, the performance of current deep learning-based methods is limited by the inher...

Clinical prediction of pathological complete response in breast cancer: a machine learning study.

BACKGROUND: This study aimed to develop and validate machine learning models to predict pathological complete response (pCR) after neoadjuvant therapy...

May 23 2025 40410776
Diagnostic accuracy of artificial intelligence-based multi-spectrum analysis for molecular fingerprint detection of SARS-CoV-2.

Reverse transcription-polymerase chain reaction (RT-PCR) is the reference standard for COVID-19 diagnosis, but the need for rapid, reproducible, and c...

May 23 2025 40419915
LaSER: How Learning Can Guide the Evolution of Equations

Evolution and learning are two distinct yet complementary forms of adaptation. While evolutionary processes operate across generations via the selec...

JanusDNA: A Powerful Bi-directional Hybrid DNA Foundation Model

Large language models (LLMs) have revolutionized natural language processing and are increasingly applied to other sequential data types, including ...

Learning Genomic Structure from $k$-mers

Sequencing a genome to determine an individual's DNA produces an enormous number of short nucleotide subsequences known as reads, which must be reas...

CorrAdjust unveils biologically relevant transcriptomic correlations by efficiently eliminating hidden confounders.

Correcting for confounding variables is often overlooked when computing RNA-RNA correlations, even though it can profoundly affect results. We introdu...

May 22 2025 40448503
SCIG: Machine learning uncovers cell identity genes in single cells by genetic sequence codes.

Deciphering cell identity genes is pivotal to understanding cell differentiation, development, and cell identity dysregulation involving diseases. Her...

May 22 2025 40433981
An Inclusive Foundation Model for Generalizable Cytogenetics in Precision Oncology

Chromosome analysis is vital for diagnosing genetic disorders and guiding cancer therapy decisions through the identification of somatic clonal aber...

Multi-omic Causal Discovery using Genotypes and Gene Expression

Causal discovery in multi-omic datasets is crucial for understanding the bigger picture of gene regulatory mechanisms, but remains challenging due t...

Blind Spot Navigation: Evolutionary Discovery of Sensitive Semantic Concepts for LVLMs

Adversarial attacks aim to generate malicious inputs that mislead deep models, but beyond causing model failure, they cannot provide certain interpr...

Machine learning identification of enhancers in the rhesus macaque genome.

Nonhuman primate (NHP) neuroanatomy and cognitive complexity make NHPs ideal models to study human neurobiology and disease. However, NHP circuit-func...

May 21 2025 40403706
Predictive machine learning and multimodal data to develop highly sensitive, composite biomarkers of disease progression in Friedreich ataxia.

Friedreich ataxia (FRDA) is a rare, inherited progressive movement disorder for which there is currently no cure. The field urgently requires more sen...

May 21 2025 40399385
GNNs and ensemble models enhance the prediction of new sRNA-mRNA interactions in unseen conditions.

Bacterial small RNAs (sRNAs) are pivotal in post-transcriptional regulation, affecting functions like virulence, metabolism, and gene expression by bi...

May 21 2025 40399818
Robustness of Boolean networks to update modes: an application to hereditary angioedema

Many familial diseases are caused by genetic accidents, which affect both the genome and its epigenetic environment, expressed as an interaction gra...

Predicting Neo-Adjuvant Chemotherapy Response in Triple-Negative Breast Cancer Using Pre-Treatment Histopathologic Images

Triple-negative breast cancer (TNBC) is an aggressive subtype defined by the lack of estrogen receptor (ER), progesterone receptor (PR), and human e...

Uncovering Cultural Representation Disparities in Vision-Language Models

Vision-Language Models (VLMs) have demonstrated impressive capabilities across a range of tasks, yet concerns about their potential biases exist. Th...

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