Infectious Disease

HIV/AIDS

Latest AI and machine learning research in hiv/aids for healthcare professionals.

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A Multi-Agent Approach to Generating Context-Rich Gene Sets

Gene sets are collections of genes that share a common biological function, process, or component that can be used to get insight into the biological relevance of genomic data. Databases containing these gene sets aids in a wide array of analytical methods. The results of these methods, such as gene set analysis or phenotype-based gene prioritization, depend on the quality of the gene sets. Despit...

H3BERTa: A CDR-H3 specific language model for antibody repertoire analysis

Antibodies are central to immune defense and therapeutic design, yet predicting which sequences confer functional activity remains challenging. Deep learning models trained on full variable regions often struggle due to sparse experimental data, signal dilution from conserved framework residues, and the extreme diversity of hypervariable loops. The heavy-chain complementarity-determining region 3 ...

Iterative immunogen optimization to focus immune responses on a conserved, subdominant viral epitope

Designing effective vaccination strategies against genetically diverse viruses, such as HIV or influenza, is hindered by the ability of these pathogen...

Decode-gLM: Tools to Interpret, Audit, and Steer Genomic Language Models

While genomic language models are enabling the de novo design of entire genomes, they remain challenging to interpret, limiting their trustworthiness....

Deep learning challenge to generate apo RNA conformations with cryptic binding site

RNA plays vital roles in diverse biological processes, thus drawing much attention as potential therapeutic target. Notably, cryptic ligand binding si...

Colon-Specific Epigenetic Clocks from Minimal Features Reveal Disease-Driven Aging

Epigenetic clocks estimate chronological and biological age from DNA methylation patterns, but conventional models typically train on hundreds of thou...

Classpose: foundation model-driven whole slide image-scale cell phenotyping in H&E

Cell segmentation and phenotyping in histopathology samples are essential techniques applied across diagnostic and research workflows. However, annota...

Cellular interactions in the sentinel lymph node predict melanoma recurrence

Melanoma outcomes have dramatically improved over the past decade, but some patients still experience disease recurrence, particularly those who prese...

vir2vec: A Viral Genome-Wide Viral Embedding

Genomic language models (gLMs) have recently emerged as powerful numerical surrogates for DNA, but existing architectures are largely focused on human...

Viral Sentry AI (VirSentAI) - Automated Zoonotic Surveillance & Drug Repurposing Agent

Zoonotic viruses capable of jumping from animal reservoirs into human populations represent a persistent and unpredictable menace to global health. To...

Comprehensive perturbation of transcription factors in human cardiomyocytes reveals the regulatory architecture of congenital heart disease

Over 100 genes have been implicated in congenital heart disease (CHD), yet the genetic basis for >50% of CHD remains unexplained. A key challenge is t...

Efficient Classification of Pulmonary Pneumonia and Tuberculosis Alongside Normal and Non-X-ray Images with Minimal Resources and Maximum Accuracy

Pneumonia, primarily caused by Streptococcus pneumoniae, and tuberculosis (TB), caused by Mycobacterium tuberculosis, continue to present significant ...

Electronic Health Record-Based Prediction Models to Inform Decisions about HIV Pre-exposure Prophylaxis: A Systematic Review

Several clinical prediction models have been developed using electronic health records data to help inform decisions about HIV pre-exposure prophylaxi...

Machine learning models for tuberculous pleural effusion diagnosis in Africa setting

Traditional diagnostic methods for Tuberculous pleural effusion (TPE) are often limited by their invasiveness, low sensitivity, and lack of accessibil...

Forecasting invasive mosquito abundance in the Basque Country, Spain using machine learning techniques

Mosquito-borne diseases cause millions of deaths each year and are increasingly spreading from tropical and subtropical regions into temperate zones, ...

Predicting Hypertension Among HIV Patients on Antiretroviral Therapy in Rural Eastern Cape, South Africa Using Machine Learning

Hypertension continues to be a major challenge in developing countries like South Africa, as it significantly contributes to the cardiovascular diseas...

Surveying the Literature on Implementation Determinants and Strategies for HIV Structural Interventions: A Systematic Review Protocol

Despite improvements in HIV prevention, treatment, and surveillance, vast disparities remain in access, uptake, and adherence of evidence-based interv...

Alterations in the hepatic microenvironment following direct-acting antiviral therapy for chronic hepatitis C

Background and aims. The first direct-acting antivirals (DAAs) to treat the viral hepatitis C (HCV) became available in 2011. Despite numerous clinica...

Designing AI-powered healthcare assistants to effectively reach vulnerable populations with health care services: A discrete choice experiment among South African university students

South African young adults are at increased risk for HIV acquisition and other non-communicable diseases and face significant barriers to accessing he...

Plasma proteomics for novel biomarker discovery in childhood tuberculosis

Failure to rapidly diagnose tuberculosis disease (TB) and initiate treatment is a driving factor of TB as a leading cause of death in children. Curren...

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