Infectious Disease

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Neural and computational evidence for a predictive learning account of the testing effect

Testing enhances memory more than studying. Although numerous studies have demonstrated the robustness of this classic effect, its neural and computational origin remains debated. Predictive learning is a potential mechanism behind this phenomenon: Because predictions and prediction errors (mismatch between predictions and feedback) are more likely to be generated in testing (relative to in studyi...

Integrating Artificial Intelligence-Driven Digital Pathology and Genomics to Establish Patient-Derived Organoids as a Novel Alternative Model for Drug Response in Head and Neck Cancer

Patient-derived organoids (PDOs) are emerging as advanced 3D ex vivo novel alternative method (NAM) preclinical models, offering significant advantages over traditional cell lines and monolayer cultures for therapeutic development. In this study, we established PDOs from surgically resected fresh tissues of human papillomavirus (HPV)-negative head and neck squamous cell carcinoma (HNSCC) across an...

A theory for self-sustained balanced states in absence of strong external currents

Recurrent neural networks with balanced excitation and inhibition exhibit irregular asynchronous dynamics, which is fundamental for cortical computati...

Partial Inhibition of Viral Replication Machinery Enhances Recombination in Herpes Simplex Viruses

Herpes simplex viruses (HSV-1 and HSV-2) are widespread human pathogens, most commonly causing oral and genital lesions. These DNA viruses use recombi...

Non-Carbohydrate Inhibitors of Sialic Acid-binding Immunomodulatory-type Lectin-7 (Siglec-7) Discovered from Genetically Encoded Bicyclic Peptide Libraries

Glycan-binding proteins (GBP) are among the most difficult to drug targets. This deficiency delays clinical progress for therapeutically important GBP...

MAP-PRS: Multi-Ancestry Portfolio-Based Polygenic Risk Scores

Polygenic Risk Scores (PRS) are emerging tools for predicting an individual’s genetic risk for complex diseases. However, their usefulness in clinical...

Hybrid Epidemic–Neuronal Dynamics: A SEIR–FitzHugh–Nagumo Model for Information Flow in Complex Neural Networks

Information transfer in neural systems is often modeled through diffusive or synaptic mechanisms that fail to capture the contagion-like propagation o...

Integrative spatial multi-omics reveals prognostic tumor niches in female genital tumors

Female genital tumors (FGTs), including ovarian, endometrial, and cervical cancers, pose a major global health challenge, yet their spatial and molecu...

Microenvironment-Inferred Genotyping: An Exclusionary Classifier for EGFR Amplification When DNA Testing Fails

EGFR amplification occurs in approximately 40-50% of glioblastoma (GBM) cases and is critical for treatment selection [1]. However, GBM tissue samples...

Subtype-Specific Dependencies and Drug Vulnerabilities Enable Precision Therapeutics in Head and Neck Cancer

Molecular heterogeneity in head and neck squamous cell carcinoma (HNSCC) is well recognized, yet existing subtype frameworks remain largely descriptiv...

Automated imaging-based tumor burden and pre-treatment circulating tumor DNA in HPV-associated oropharynx cancer

Artificial intelligence (AI)-based imaging analysis has applications for the diagnosis of head and neck malignancies, and serum circulating tumor-asso...

End-to-end prediction of clinical outcomes in head and neck squamous cell carcinoma with foundation model-based multiple instance learning

Foundation models (FMs) show promise in medical AI by learning flexible features from large datasets, potentially surpassing handcrafted radiomics. Ou...

Exploring multidrug resistance patterns in community-acquired E. coli urinary tract infections with machine learning

While associations of antibiotic resistance traits are not random in multidrug-resistant (MDR) bacteria, clinically relevant resistance patterns remai...

Tracking the Preclinical Progression of Transthyretin Amyloid Cardiomyopathy Using Artificial Intelligence-Enabled Electrocardiography and Echocardiography

The diagnosis of transthyretin amyloid cardiomyopathy (ATTR-CM) requires advanced imaging, precluding large-scale pre-clinical testing. Artificial int...

Assessing Genotype-Phenotype Correlations with Deep Learning in Colorectal Cancer: A Multi-Centric Study

Deep Learning (DL) has emerged as a powerful tool to predict genetic biomarkers directly from digitized Hematoxylin and Eosin (H&E) slides in colorect...

Scalable system-wide CYP2C19 pharmacogenomic testing reveals 38% excess incidence of adverse events in metabolizers receiving inappropriate prescriptions

In spite of evidence and recommendations reflecting the importance of pharmacogenomic testing, most prescriptions are still given without testing. We ...

Unmet Needs in Acute Hepatic Porphyria Diagnosis: A Comparative Big Data Analysis of an AI-based Human-in-the-Loop Screening Versus Standard of Care

Acute Hepatic Porphyria (AHP) is a rare genetic disease characterized by unpredictable life-threatening attacks. There is no reliable biochemical scre...

Machine learning-based calculation of neurovascular compression surface area correlates with post-microvascular decompression pain outcomes for trigeminal neuralgia

Machine learning-generated segmentations of the trigeminal nerve and nearby blood vessels have the potential to quantify the magnitude of neurovascula...

Artificial Intelligence in Colposcopy: Evaluation of ChatGPT as a Diagnostic and Predictive Support Tool

Colposcopy remains a critical step in the diagnostic algorithm following a positive HPV test, but it suffers from limitations such as inter-operator v...

Persistent Homology and Gabor Features Reveal Inconsistencies Between Widely Used Colorectal Cancer Training and Testing Datasets

Recent work on computer vision and image processing has relied substantially on open datasets, which allow for an objective comparison of techniques a...

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