AI Medical Compendium Journal:
PLoS biology

Showing 1 to 10 of 31 articles

Rhythm profiling using COFE reveals multi-omic circadian rhythms in human cancers in vivo.

PLoS biology
The study of ubiquitous circadian rhythms in human physiology requires regular measurements across time. Repeated sampling of the different internal tissues that house circadian clocks is both practically and ethically infeasible. Here, we present a ...

Explosion of formulaic research articles, including inappropriate study designs and false discoveries, based on the NHANES US national health database.

PLoS biology
With the growth of artificial intelligence (AI)-ready datasets such as the National Health and Nutrition Examination Survey (NHANES), new opportunities for data-driven research are being created, but also generating risks of data exploitation by pape...

The IBEX Knowledge-Base: A central resource for multiplexed imaging techniques.

PLoS biology
Multiplexed imaging is a powerful approach in spatial biology, although it is complex, expensive and labor-intensive. Here, we present the IBEX Knowledge-Base, a central resource for reagents, protocols and more, to enhance knowledge sharing, optimiz...

New solutions for antibiotic discovery: Prioritizing microbial biosynthetic space using ecology and machine learning.

PLoS biology
With the explosive increase in genome sequence data, perhaps the major challenge in natural-product-based drug discovery is the identification of gene clusters most likely to specify new chemistry and bioactivities. We discuss the challenges and stat...

Mining biology for antibiotic discovery.

PLoS biology
The rise of antibiotic resistance calls for innovative solutions. The realization that biology can be mined digitally using artificial intelligence has revealed a new paradigm for antibiotic discovery, offering hope in the fight against superbugs.

SPOT: A machine learning model that predicts specific substrates for transport proteins.

PLoS biology
Transport proteins play a crucial role in cellular metabolism and are central to many aspects of molecular biology and medicine. Determining the function of transport proteins experimentally is challenging, as they become unstable when isolated from ...

Molecular connectomics: Placing cells into morphological tissue context.

PLoS biology
Here we propose "molecular connectomics" to link molecular and morphological cell features in three dimensions across scales, using machine learning and artificial intelligence to reveal emergent properties of complex biological systems.

The principle of uncertainty in biology: Will machine learning/artificial intelligence lead to the end of mechanistic studies?

PLoS biology
Molecular Biology has long tried to discover mechanisms, considering that unless we understand the principles, we cannot develop applications. Now machine learning and artificial intelligence enable direct leaps to application without understanding t...

Many but not all deep neural network audio models capture brain responses and exhibit correspondence between model stages and brain regions.

PLoS biology
Models that predict brain responses to stimuli provide one measure of understanding of a sensory system and have many potential applications in science and engineering. Deep artificial neural networks have emerged as the leading such predictive model...

Accurate classification of major brain cell types using in vivo imaging and neural network processing.

PLoS biology
Comprehensive analysis of tissue cell type composition using microscopic techniques has primarily been confined to ex vivo approaches. Here, we introduce NuCLear (Nucleus-instructed tissue composition using deep learning), an approach combining in vi...