AIMC Topic: Abstracting and Indexing

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Biomedical literature classification with a CNNs-based hybrid learning network.

PloS one Jul 26, 2018
Deep learning techniques, e.g., Convolutional Neural Networks (CNNs), have been explosively applied to the research in the fields of information retrieval and natural language processing. However, few research efforts have addressed semantic indexing...
Humans Neural Networks, Computer Machine Learning Semantics Abstracting and Indexing MEDLINE Natural Language Processing Periodicals as Topic Information Storage and Retrieval
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Large-scale online semantic indexing of biomedical articles via an ensemble of multi-label classification models.

Journal of biomedical semantics Sep 22, 2017
BACKGROUND: In this paper we present the approach that we employed to deal with large scale multi-label semantic indexing of biomedical papers. This work was mainly implemented within the context of the BioASQ challenge (2013-2017), a challenge conce...
Machine Learning Models, Statistical Semantics Biomedical Research Abstracting and Indexing
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MeSH Now: automatic MeSH indexing at PubMed scale via learning to rank.

Journal of biomedical semantics Apr 17, 2017
BACKGROUND: MeSH indexing is the task of assigning relevant MeSH terms based on a manual reading of scholarly publications by human indexers. The task is highly important for improving literature retrieval and many other scientific investigations in ...
PubMed Automation Abstracting and Indexing Machine Learning Benchmarking Medical Subject Headings
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RevManHAL: towards automatic text generation in systematic reviews.

Systematic reviews Feb 9, 2017
BACKGROUND: Systematic reviews are a key part of healthcare evaluation. They involve important painstaking but repetitive work. A major producer of systematic reviews, the Cochrane Collaboration, employs Review Manager (RevMan) programme-a software w...
Humans Software Abstracting and Indexing Natural Language Processing Review Literature as Topic
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Advanced literature analysis in a Big Data world.

Annals of the New York Academy of Sciences Nov 10, 2016
Comprehensive data mining of the scientific literature has become an increasing challenge. To address this challenge, Elsevier's Pathway Studio software uses the techniques of natural language processing to systematically extract specific biological ...
Translational Research, Biomedical Schizophrenia Data Mining Mass Screening Natural Language Processing Periodicals as Topic Databases, Bibliographic Abstracting and Indexing National Institute of Mental Health (U.S.) Database Management Systems Animals Depressive Disorder, Major Anxiety Disorders Bipolar Disorder Computational Biology United States Biomarkers Prognosis Biomedical Research Software Mental Disorders Humans
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A corpus of potentially contradictory research claims from cardiovascular research abstracts.

Journal of biomedical semantics Jun 7, 2016
BACKGROUND: Research literature in biomedicine and related fields contains a huge number of claims, such as the effectiveness of treatments. These claims are not always consistent and may even contradict each other. Being able to identify contradicto...
Natural Language Processing Biomedical Research Review Literature as Topic Abstracting and Indexing Cardiovascular Diseases Cardiovascular System Medicine in Literature
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An overview of the BIOASQ large-scale biomedical semantic indexing and question answering competition.

BMC bioinformatics Apr 30, 2015
BACKGROUND: This article provides an overview of the first BIOASQ challenge, a competition on large-scale biomedical semantic indexing and question answering (QA), which took place between March and September 2013. BIOASQ assesses the ability of syst...
Humans Software Algorithms United States Natural Language Processing PubMed National Library of Medicine (U.S.) Semantics Abstracting and Indexing Medical Subject Headings
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USI: a fast and accurate approach for conceptual document annotation.

BMC bioinformatics Mar 14, 2015
BACKGROUND: Semantic approaches such as concept-based information retrieval rely on a corpus in which resources are indexed by concepts belonging to a domain ontology. In order to keep such applications up-to-date, new entities need to be frequently ...
Medical Subject Headings Pattern Recognition, Automated Vocabulary, Controlled Semantics Abstracting and Indexing User-Computer Interface Natural Language Processing Information Storage and Retrieval Humans Algorithms
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Biomedical question answering using semantic relations.

BMC bioinformatics Jan 16, 2015
BACKGROUND: The proliferation of the scientific literature in the field of biomedicine makes it difficult to keep abreast of current knowledge, even for domain experts. While general Web search engines and specialized information retrieval (IR) syste...
Natural Language Processing Algorithms Abstracting and Indexing Information Storage and Retrieval Humans Databases, Factual Oligonucleotide Array Sequence Analysis Semantics Pharmacogenetics Software
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BiobankConnect: software to rapidly connect data elements for pooled analysis across biobanks using ontological and lexical indexing.

Journal of the American Medical Informatics Association : JAMIA Oct 31, 2014
OBJECTIVE: Pooling data across biobanks is necessary to increase statistical power, reveal more subtle associations, and synergize the value of data sources. However, searching for desired data elements among the thousands of available elements and h...
Datasets as Topic Humans Biological Ontologies Systems Integration Software Abstracting and Indexing User-Computer Interface Computational Biology
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