AIMC Topic: Biological Ontologies

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Bootstrapping Adversarial Learning of Biomedical Ontology Alignments.

AMIA ... Annual Symposium proceedings. AMIA Symposium Mar 4, 2020
Learning how to automatically align biomedical ontologies has been a long-standing goal, given their ever-growing content and the many applications that rely on them. Because the knowledge graphs underlying biomedical ontologies enable neural learnin...
Biological Ontologies Models, Theoretical Vocabulary, Controlled Semantics Neural Networks, Computer Machine Learning
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genoDraw: A Web Tool for Developing Pedigree Diagrams Using the Standardized Human Pedigree Nomenclature Integrated with Biomedical Vocabularies.

AMIA ... Annual Symposium proceedings. AMIA Symposium Mar 4, 2020
The integration of genetic information in current clinical routine has raised a need for tools to exploit family genetic knowledge. On the clinical side, an application for managing and visualizing pedigree diagrams could provide genetics specialists...
Terminology as Topic Pedigree Vocabulary, Controlled Computer Graphics Internet Humans Biological Ontologies Software
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Towards an ontology of cognitive processes and their neural substrates: A structural equation modeling approach.

PloS one Feb 10, 2020
A key challenge in the field of cognitive neuroscience is to identify discriminable cognitive functions, and then map these functions to brain activity. In the current study, we set out to explore the relationships between performance arising from di...
Cognition Models, Neurological Male Latent Class Analysis Biological Ontologies Behavior Brain Female Young Adult Adult Humans
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Searching for the Big Pictures.

Perspectives on psychological science : a journal of the Association for Psychological Science Feb 3, 2020
My goal in searching for the big pictures is to discover novel ways of organizing information in psychology that will have both theoretical and practical significance. The first section lists my reasons for writing each of five articles. The second s...
Humans Artificial Intelligence Biological Ontologies Classification Writing Knowledge Psychology
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Combining lexical and context features for automatic ontology extension.

Journal of biomedical semantics Jan 13, 2020
BACKGROUND: Ontologies are widely used across biology and biomedicine for the annotation of databases. Ontology development is often a manual, time-consuming, and expensive process. Automatic or semi-automatic identification of classes that can be ad...
Humans Automation Biological Ontologies Disease Nerve Net
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Evolving knowledge graph similarity for supervised learning in complex biomedical domains.

BMC bioinformatics Jan 3, 2020
BACKGROUND: In recent years, biomedical ontologies have become important for describing existing biological knowledge in the form of knowledge graphs. Data mining approaches that work with knowledge graphs have been proposed, but they are based on ve...
Biological Ontologies Supervised Machine Learning Gene Ontology Knowledge Bases Data Mining Semantics Humans Algorithms
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DNA is not an ontologically distinctive developmental cause.

Studies in history and philosophy of biological and biomedical sciences Dec 30, 2019
In this article I critically evaluate the thesis that DNA is an ontologically distinctive developmental cause. I shall critically analyse different versions of the latter thesis by taking into consideration concrete developmental cases. I shall argue...
DNA Developmental Biology Biological Evolution Metaphysics Biological Ontologies
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OHMI: the ontology of host-microbiome interactions.

Journal of biomedical semantics Dec 30, 2019
BACKGROUND: Host-microbiome interactions (HMIs) are critical for the modulation of biological processes and are associated with several diseases. Extensive HMI studies have generated large amounts of data. We propose that the logical representation o...
Host-Pathogen Interactions Microbiota Biological Ontologies
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The Hearing Impairment Ontology: A Tool for Unifying Hearing Impairment Knowledge to Enhance Collaborative Research.

Genes Nov 21, 2019
Hearing impairment (HI) is a common sensory disorder that is defined as the partial or complete inability to detect sound in one or both ears. This diverse pathology is associated with a myriad of phenotypic expressions and can be non-syndromic or sy...
Humans Biomedical Research Hearing Loss Cooperative Behavior Biological Ontologies Knowledge
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Exploring semantic deep learning for building reliable and reusable one health knowledge from PubMed systematic reviews and veterinary clinical notes.

Journal of biomedical semantics Nov 12, 2019
BACKGROUND: Deep Learning opens up opportunities for routinely scanning large bodies of biomedical literature and clinical narratives to represent the meaning of biomedical and clinical terms. However, the validation and integration of this knowledge...
Deep Learning Systematic Reviews as Topic PubMed Knowledge Bases Veterinarians Semantics One Health Biological Ontologies
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