AIMC Topic: Computational Biology

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RNA secondary structure prediction using deep learning with thermodynamic integration.

Nature communications
Accurate predictions of RNA secondary structures can help uncover the roles of functional non-coding RNAs. Although machine learning-based models have achieved high performance in terms of prediction accuracy, overfitting is a common risk for such hi...

Apache Spark based kernelized fuzzy clustering framework for single nucleotide polymorphism sequence analysis.

Computational biology and chemistry
This paper introduces a kernel based fuzzy clustering approach to deal with the non-linear separable problems by applying kernel Radial Basis Functions (RBF) which maps the input data space non-linearly into a high-dimensional feature space. Discover...

A Correlation Analysis between SNPs and ROIs of Alzheimer's Disease Based on Deep Learning.

BioMed research international
. At present, the research methods for image genetics of Alzheimer's disease based on machine learning are mainly divided into three steps: the first step is to preprocess the original image and gene information into digital signals that are easy to ...

TAP 1.0: A robust immunoinformatic tool for the prediction of tumor T-cell antigens based on AAindex properties.

Computational biology and chemistry
Immunotherapy is a research area with great potential in drug discovery for cancer treatment. Because of the capacity of tumor antigens to activate the immune response and promote the destruction of tumor cells, they are considered excellent immunoth...

A multipurpose machine learning approach to predict COVID-19 negative prognosis in São Paulo, Brazil.

Scientific reports
The new coronavirus disease (COVID-19) is a challenge for clinical decision-making and the effective allocation of healthcare resources. An accurate prognostic assessment is necessary to improve survival of patients, especially in developing countrie...

A Staging Auxiliary Diagnosis Model for Nonsmall Cell Lung Cancer Based on the Intelligent Medical System.

Computational and mathematical methods in medicine
At present, human health is threatened by many diseases, and lung cancer is one of the most dangerous tumors that threaten human life. In most developing countries, due to the large population and lack of medical resources, it is difficult for doctor...

Voting-based integration algorithm improves causal network learning from interventional and observational data: An application to cell signaling network inference.

PloS one
In order to increase statistical power for learning a causal network, data are often pooled from multiple observational and interventional experiments. However, if the direct effects of interventions are uncertain, multi-experiment data pooling can r...

Computational approach for identification, characterization, three-dimensional structure modelling and machine learning-based thermostability prediction of xylanases from the genome of Aspergillus fumigatus.

Computational biology and chemistry
Identification of thermostable and alkaline xylanases from different fungal and bacterial species have gained an interest for the researchers because of its biotechnological relevance in many industries, such as pulp, paper, and bioethanol. In this s...

An aggregate method for thorax diseases classification.

Scientific reports
A common problem found in real-word medical image classification is the inherent imbalance of the positive and negative patterns in the dataset where positive patterns are usually rare. Moreover, in the classification of multiple classes with neural ...