AIMC Topic: Deep Learning

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Transitional zone prostate cancer: Performance of texture-based machine learning and image-based deep learning.

Medicine
This study is aimed to explore the performance of texture-based machine learning and image-based deep-learning for enhancing detection of Transitional-zone prostate cancer (TZPCa) in the background of benign prostatic hyperplasia (BPH), using a one-t...

Prediction of intradialytic hypotension using pre-dialysis features-a deep learning-based artificial intelligence model.

Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association
BACKGROUND: Intradialytic hypotension (IDH) is a serious complication of hemodialysis (HD) that is associated with increased risks of cardiovascular morbidity and mortality. However, its accurate prediction remains a clinical challenge. The aim of th...

Application of deep learning in cancer epigenetics through DNA methylation analysis.

Briefings in bioinformatics
DNA methylation is a fundamental epigenetic modification involved in various biological processes and diseases. Analysis of DNA methylation data at a genome-wide and high-throughput level can provide insights into diseases influenced by epigenetics, ...

Integrating AlphaFold and deep learning for atomistic interpretation of cryo-EM maps.

Briefings in bioinformatics
Interpretation of cryo-electron microscopy (cryo-EM) maps requires building and fitting 3D atomic models of biological molecules. AlphaFold-predicted models generate initial 3D coordinates; however, model inaccuracy and conformational heterogeneity o...

SoyDNGP: a web-accessible deep learning framework for genomic prediction in soybean breeding.

Briefings in bioinformatics
Soybean is a globally significant crop, playing a vital role in human nutrition and agriculture. Its complex genetic structure and wide trait variation, however, pose challenges for breeders and researchers aiming to optimize its yield and quality. A...

Benchmarking deep learning methods for predicting CRISPR/Cas9 sgRNA on- and off-target activities.

Briefings in bioinformatics
In silico design of single guide RNA (sgRNA) plays a critical role in clustered regularly interspaced, short palindromic repeats/CRISPR-associated protein 9 (CRISPR/Cas9) system. Continuous efforts are aimed at improving sgRNA design with efficient o...

GOWDL: gene ontology-driven wide and deep learning model for cell typing of scRNA-seq data.

Briefings in bioinformatics
Single-cell RNA-sequencing (scRNA-seq) allows for obtaining genomic and transcriptomic profiles of individual cells. That data make it possible to characterize tissues at the cell level. In this context, one of the main analyses exploiting scRNA-seq ...

HTCL-DDI: a hierarchical triple-view contrastive learning framework for drug-drug interaction prediction.

Briefings in bioinformatics
Drug-drug interaction (DDI) prediction can discover potential risks of drug combinations in advance by detecting drug pairs that are likely to interact with each other, sparking an increasing demand for computational methods of DDI prediction. Howeve...

Evaluation of deep learning-based deliverable VMAT plan generated by prototype software for automated planning for prostate cancer patients.

Journal of radiation research
This study aims to evaluate the dosimetric accuracy of a deep learning (DL)-based deliverable volumetric arc radiation therapy (VMAT) plan generated using DL-based automated planning assistant system (AIVOT, prototype version) for patients with prost...

Multimodal deep learning approaches for single-cell multi-omics data integration.

Briefings in bioinformatics
Integrating single-cell multi-omics data is a challenging task that has led to new insights into complex cellular systems. Various computational methods have been proposed to effectively integrate these rapidly accumulating datasets, including deep l...