AI Medical Compendium Topic

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Knowledge Bases

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IAMPDB: A Knowledgebase of Manually Curated Insects-Derived Antimicrobial Peptides.

Journal of peptide science : an official publication of the European Peptide Society
Insects, a majority of animal species, rely on innate immunity and antimicrobial peptides (AMPs), which are a part of their innate immunity, to combat diverse parasites and pathogens. These peptides have applications ranging from agriculture to antim...

BindingDB in 2024: a FAIR knowledgebase of protein-small molecule binding data.

Nucleic acids research
BindingDB (bindingdb.org) is a public, web-accessible database of experimentally measured binding affinities between small molecules and proteins, which supports diverse applications including medicinal chemistry, biochemical pathway annotation, trai...

PanKB: An interactive microbial pangenome knowledgebase for research, biotechnological innovation, and knowledge mining.

Nucleic acids research
The exponential growth of microbial genome data presents unprecedented opportunities for unlocking the potential of microorganisms. The burgeoning field of pangenomics offers a framework for extracting insights from this big biological data. Recent a...

UniProt: the Universal Protein Knowledgebase in 2025.

Nucleic acids research
The aim of the UniProt Knowledgebase (UniProtKB; https://www.uniprot.org/) is to provide users with a comprehensive, high-quality and freely accessible set of protein sequences annotated with functional information. In this publication, we describe o...

canSAR 2024-an update to the public drug discovery knowledgebase.

Nucleic acids research
canSAR (https://cansar.ai) continues to serve as the largest publicly available platform for cancer-focused drug discovery and translational research. It integrates multidisciplinary data from disparate and otherwise siloed public data sources as wel...

ASpdb: an integrative knowledgebase of human protein isoforms from experimental and AI-predicted structures.

Nucleic acids research
Alternative splicing is a crucial cellular process in eukaryotes, enabling the generation of multiple protein isoforms with diverse functions from a single gene. To better understand the impact of alternative splicing on protein structures, protein-p...

scTWAS Atlas: an integrative knowledgebase of single-cell transcriptome-wide association studies.

Nucleic acids research
Single-cell transcriptome-wide association studies (scTWAS) is a new method for conducting TWAS analysis at the cellular level to identify gene-trait associations with higher precision. This approach helps overcome the challenge of interpreting cell-...

OrgXenomics: an integrated proteomic knowledge base for patient-derived organoid and xenograft.

Nucleic acids research
Patient-derived models (PDMs, particularly organoids and xenografts) are irreplaceable tools for precision medicine, from target development to lead identification, then to preclinical evaluation, and finally to clinical decision-making. So far, PDM-...

CircaKB: a comprehensive knowledgebase of circadian genes across multiple species.

Nucleic acids research
Circadian rhythms, which are the natural cycles that dictate various physiological processes over a 24-h period, have been increasingly recognized as important in the management and treatment of various human diseases. However, the lack of sufficient...

The Metabolic Treatabolome and Inborn Errors of Metabolism Knowledgebase therapy tool: Do not miss the opportunity to treat!

Journal of inherited metabolic disease
Inborn errors of metabolism (IEMs) are rare genetic conditions with significant morbidity and mortality. Technological advances have increased therapeutic options, making it challenging to remain up to date. A centralized therapy knowledgebase is nee...