AIMC Topic: Multilocus Sequence Typing

Clear Filters Showing 1 to 8 of 8 articles

Neural network-based predictions of antimicrobial resistance phenotypes in multidrug-resistant from whole genome sequencing and gene expression.

Antimicrobial agents and chemotherapy Nov 14, 2024
Whole genome sequencing (WGS) potentially represents a rapid approach for antimicrobial resistance genotype-to-phenotype prediction. However, the challenge still exists to predict fully minimum inhibitory concentrations (MICs) and antimicrobial susce...
Anti-Bacterial Agents Phenotype Phylogeny Humans Neural Networks, Computer Whole Genome Sequencing Acinetobacter Infections Acinetobacter baumannii Multilocus Sequence Typing Microbial Sensitivity Tests Drug Resistance, Multiple, Bacterial Genotype Genome, Bacterial
View on PubMed DOI

Prediction of Clonal Complexes from Multilocus Variable Number Tandem Repeat Analysis Patterns Using a Machine Learning Approach.

Foodborne pathogens and disease Jul 4, 2024
Multilocus variable number tandem repeat analysis (MLVA) is a molecular subtyping technique that remains useful for those without the resources to access whole genome sequencing for the tracking and tracing of bacterial contaminants. Unlike technique...
Minisatellite Repeats Machine Learning Multilocus Sequence Typing Bacterial Typing Techniques Food Microbiology Listeria monocytogenes
View on PubMed DOI

Machine learning-based analyses support the existence of species complexes for and .

Parasitology Jun 16, 2020
Human strongyloidiasis is a serious disease mostly attributable to Strongyloides stercoralis and to a lesser extent Strongyloides fuelleborni, a parasite mainly of non-human primates. The role of animals as reservoirs of human-infecting Strongyloides...
Strongyloides stercoralis Strongyloidiasis Electron Transport Complex IV Genes, Helminth Strongyloides Disease Reservoirs Primates Genetic Speciation Genotype Computational Biology Dogs RNA, Ribosomal, 18S Multilocus Sequence Typing Dog Diseases Haplotypes Humans Machine Learning Animals Phylogeny Feces
View on PubMed DOI

Giardia duodenalis assemblages in cats from Virginia, USA.

Veterinary parasitology, regional studies and reports Dec 18, 2018
Giardia duodenalis is considered a species complex that is divided into 8 genetically distinct but morphologically identical assemblages (A-H). Assemblages C-H are generally host adapted, while A and B infect both people and animals and are considere...
Polymerase Chain Reaction Virginia Genotyping Techniques DNA, Protozoan Multilocus Sequence Typing Animals Giardia lamblia Phylogeny Giardiasis Cats
View on PubMed DOI

A new scheme for strain typing of methicillin-resistant Staphylococcus aureus on the basis of matrix-assisted laser desorption ionization time-of-flight mass spectrometry by using machine learning approach.

PloS one Mar 13, 2018
Methicillin-resistant Staphylococcus aureus (MRSA), one of the most important clinical pathogens, conducts an increasing number of morbidity and mortality in the world. Rapid and accurate strain typing of bacteria would facilitate epidemiological inv...
Methicillin-Resistant Staphylococcus aureus Cluster Analysis Predictive Value of Tests Bacterial Typing Techniques Humans Staphylococcal Infections Cost-Benefit Analysis Machine Learning Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization Multilocus Sequence Typing
View on PubMed DOI

Characterization of fecal vancomycin-resistant enterococci with acquired and intrinsic resistance mechanisms in wild animals, Spain.

Microbial ecology Jul 21, 2015
The objectives were to evaluate the presence of vancomycin-resistant enterococci with acquired (VRE-a) and intrinsic (VRE-i) resistance mechanisms in fecal samples from different wild animals, and analyze their phenotypes and genotypes of antimicrobi...
Ampicillin Vancomycin Multilocus Sequence Typing Vancomycin-Resistant Enterococci Drug Resistance, Multiple, Bacterial Galliformes Feces Tetracycline Animals, Wild Bacterial Proteins Tetracycline Resistance Microbial Sensitivity Tests Ampicillin Resistance Animals Spain Aminoglycosides Enterococcus faecium Carbon-Oxygen Ligases Sus scrofa Falconiformes
View on PubMed DOI

Real-time FT-IR typing of Klebsiella pneumoniae: a flexible and rapid approach for outbreak detection and infection control.

The Journal of antimicrobial chemotherapy Jul 1, 2025
BACKGROUND: Expansion of carbapenemase-producing Klebsiella pneumoniae (CP-Kp) is driven by within-hospital transmission, requiring timely typing data for effective infection control.
Humans Sensitivity and Specificity Disease Outbreaks Infection Control Cross Infection Multilocus Sequence Typing Klebsiella pneumoniae Portugal Klebsiella Infections Bacterial Typing Techniques Spectroscopy, Fourier Transform Infrared
View on PubMed DOI

Novel robotic tools used for the detection of faecal shedding of Escherichia coli resistant to critically important antimicrobials in healthy dogs.

Veterinary microbiology Jul 1, 2025
Escherichia coli recovered from dogs with clinical conditions such as urinary tract infections are often used to assess populations for resistance to critically important antimicrobials (CIAs). Despite the potential importance of such strains, the nu...
Feces Fluoroquinolones Escherichia coli Multilocus Sequence Typing Robotics Bacterial Shedding Dogs Dog Diseases Animals Escherichia coli Infections Anti-Bacterial Agents Microbial Sensitivity Tests Ciprofloxacin Drug Resistance, Bacterial Drug Resistance, Multiple, Bacterial
View on PubMed DOI
Popular Topics
Recent Journals