AIMC Topic: Natural Language Processing

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Deep-Learning Resources for Studying Glycan-Mediated Host-Microbe Interactions.

Cell host & microbe
Glycans, the most diverse biopolymer, are shaped by evolutionary pressures stemming from host-microbe interactions. Here, we present machine learning and bioinformatics methods to leverage the evolutionary information present in glycans to gain insig...

Artificial Intelligence in Neurosurgery: a Systematic Review Using Topic Modeling. Part I: Major Research Areas.

Sovremennye tekhnologii v meditsine
UNLABELLED: In recent years, the number of scientific publications on artificial intelligence (AI), primarily on machine learning, with respect to neurosurgery, has increased. was to conduct a systematic literature review and identify the main areas...

Prediction of severe chest injury using natural language processing from the electronic health record.

Injury
INTRODUCTION: Trauma injury severity scores are currently calculated retrospectively from the electronic health record (EHR) using manual annotation by certified trauma coders. Natural language processing (NLP) of clinical documents in the EHR may en...

Cross domains adversarial learning for Chinese named entity recognition for online medical consultation.

Journal of biomedical informatics
Deep learning methods have been applied to Chinese named entity recognition for the online medical consultation. They require a large number of marked samples. However, no such database is available at present. This paper begins with constructing a l...

Concept placement using BERT trained by transforming and summarizing biomedical ontology structure.

Journal of biomedical informatics
The comprehensive modeling and hierarchical positioning of a new concept in an ontology heavily relies on its set of proper subsumption relationships (IS-As) to other concepts. Identifying a concept's IS-A relationships is a laborious task requiring ...

TNFPred: identifying tumor necrosis factors using hybrid features based on word embeddings.

BMC medical genomics
BACKGROUND: Cytokines are a class of small proteins that act as chemical messengers and play a significant role in essential cellular processes including immunity regulation, hematopoiesis, and inflammation. As one important family of cytokines, tumo...

Automatic classification of scanned electronic health record documents.

International journal of medical informatics
OBJECTIVES: Electronic Health Records (EHRs) contain scanned documents from a variety of sources such as identification cards, radiology reports, clinical correspondence, and many other document types. We describe the distribution of scanned document...

Violence detection explanation via semantic roles embeddings.

BMC medical informatics and decision making
BACKGROUND: Emergency room reports pose specific challenges to natural language processing techniques. In this setting, violence episodes on women, elderly and children are often under-reported. Categorizing textual descriptions as containing violenc...

Extracting medication information from unstructured public health data: a demonstration on data from population-based and tertiary-based samples.

BMC medical research methodology
BACKGROUND: Unstructured data from clinical epidemiological studies can be valuable and easy to obtain. However, it requires further extraction and processing for data analysis. Doing this manually is labor-intensive, slow and subject to error. In th...