AIMC Topic: Natural Language Processing

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A Natural Language Processing Tool for Large-Scale Data Extraction from Echocardiography Reports.

PloS one
Large volumes of data are continuously generated from clinical notes and diagnostic studies catalogued in electronic health records (EHRs). Echocardiography is one of the most commonly ordered diagnostic tests in cardiology. This study sought to expl...

Active learning for ontological event extraction incorporating named entity recognition and unknown word handling.

Journal of biomedical semantics
BACKGROUND: Biomedical text mining may target various kinds of valuable information embedded in the literature, but a critical obstacle to the extension of the mining targets is the cost of manual construction of labeled data, which are required for ...

Electronic medical record phenotyping using the anchor and learn framework.

Journal of the American Medical Informatics Association : JAMIA
BACKGROUND: Electronic medical records (EMRs) hold a tremendous amount of information about patients that is relevant to determining the optimal approach to patient care. As medicine becomes increasingly precise, a patient's electronic medical record...

Automated identification of molecular effects of drugs (AIMED).

Journal of the American Medical Informatics Association : JAMIA
INTRODUCTION: Genomic profiling information is frequently available to oncologists, enabling targeted cancer therapy. Because clinically relevant information is rapidly emerging in the literature and elsewhere, there is a need for informatics technol...

Computer-based coding of free-text job descriptions to efficiently identify occupations in epidemiological studies.

Occupational and environmental medicine
BACKGROUND: Mapping job titles to standardised occupation classification (SOC) codes is an important step in identifying occupational risk factors in epidemiological studies. Because manual coding is time-consuming and has moderate reliability, we de...

Initial investigation into computer scoring of candidate essays for personnel selection.

The Journal of applied psychology
[Correction Notice: An Erratum for this article was reported in Vol 101(7) of Journal of Applied Psychology (see record 2016-32115-001). In the article the affiliations for Emily D. Campion and Matthew H. Reider were originally incorrect. All version...

Sortal anaphora resolution to enhance relation extraction from biomedical literature.

BMC bioinformatics
BACKGROUND: Entity coreference is common in biomedical literature and it can affect text understanding systems that rely on accurate identification of named entities, such as relation extraction and automatic summarization. Coreference resolution is ...

Building a Natural Language Processing Tool to Identify Patients With High Clinical Suspicion for Kawasaki Disease from Emergency Department Notes.

Academic emergency medicine : official journal of the Society for Academic Emergency Medicine
OBJECTIVE: Delayed diagnosis of Kawasaki disease (KD) may lead to serious cardiac complications. We sought to create and test the performance of a natural language processing (NLP) tool, the KD-NLP, in the identification of emergency department (ED) ...

DiMeX: A Text Mining System for Mutation-Disease Association Extraction.

PloS one
The number of published articles describing associations between mutations and diseases is increasing at a fast pace. There is a pressing need to gather such mutation-disease associations into public knowledge bases, but manual curation slows down th...

Developing a web-based SKOS editor.

Journal of biomedical semantics
BACKGROUND: The Simple Knowledge Organization System (SKOS) was introduced to the wider research community by a 2005 World Wide Web Consortium (W3C) working draft, and further developed and refined in a 2009 W3C recommendation. Since then, SKOS has b...