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A deep learning-integrated micro-CT image analysis pipeline for quantifying rice lodging resistance-related traits.

Plant communications
Lodging is a common problem in rice, reducing its yield and mechanical harvesting efficiency. Rice architecture is a key aspect of its domestication and a major factor that limits its high productivity. The ideal rice culm structure, including major_...

Automated Counting Grains on the Rice Panicle Based on Deep Learning Method.

Sensors (Basel, Switzerland)
Grain number per rice panicle, which directly determines grain yield, is an important agronomic trait for rice breeding and yield-related research. However, manually counting grains of rice per panicle is time-consuming, laborious, and error-prone. I...

A Tactile Method for Rice Plant Recognition Based on Machine Learning.

Sensors (Basel, Switzerland)
Accurate and real-time recognition of rice plants is the premise underlying the implementation of precise weed control. However, achieving desired results in paddy fields using the traditional visual method is difficult due to the occlusion of rice l...

Using Deep Convolutional Neural Networks for Image-Based Diagnosis of Nutrient Deficiencies in Rice.

Computational intelligence and neuroscience
Symptoms of nutrient deficiencies in rice plants often appear on the leaves. The leaf color and shape, therefore, can be used to diagnose nutrient deficiencies in rice. Image classification is an efficient and fast approach for this diagnosis task. D...

Ab initio GO-based mining for non-tandem-duplicated functional clusters in three model plant diploid genomes.

PloS one
A functional Non-Tandem Duplicated Cluster (FNTDC) is a group of non-tandem-duplicated genes that are located closer than expected by mere chance and have a role in the same biological function. The identification of secondary-compounds-related FNTDC...

PlantMirP-Rice: An Efficient Program for Rice Pre-miRNA Prediction.

Genes
Rice microRNAs (miRNAs) are important post-transcriptional regulation factors and play vital roles in many biological processes, such as growth, development, and stress resistance. Identification of these molecules is the basis of dissecting their re...

Accurate prediction of species-specific 2-hydroxyisobutyrylation sites based on machine learning frameworks.

Analytical biochemistry
Lysine 2-hydroxyisobutyrylation (K) is a newly discovered post-translational modification (PTM) across eukaryotes and prokaryotes in recent years, which plays a significant role in diverse cellular functions. Accurate prediction of K sites is a first...

SemanticGO: a tool for gene functional similarity analysis in Arabidopsis thaliana and rice.

Plant science : an international journal of experimental plant biology
Gene or pathway functional similarities are important information for researchers. However, these similarities are often described sparsely and qualitatively. The latent semantic analysis of Arabidopsis thaliana (Arabidopsis) Gene Ontology (GO) data ...

Detection of rice plant diseases based on deep transfer learning.

Journal of the science of food and agriculture
BACKGROUND: As the primary food for nearly half of the world's population, rice is cultivated almost all over the world, especially in Asian countries. However, the farmers and planting experts have been facing many persistent agricultural challenges...

Hyperspectral imaging for accurate determination of rice variety using a deep learning network with multi-feature fusion.

Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy
The phenomena of rice adulteration and shoddy rice arise continuously in high-quality rice and reduce the interests of producers, consumers and traders. Hyperspectral imaging (HSI) was conducted to determine rice variety using a deep learning network...