AI Medical Compendium Topic:
Software

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CellSeg: a robust, pre-trained nucleus segmentation and pixel quantification software for highly multiplexed fluorescence images.

BMC bioinformatics
BACKGROUND: Algorithmic cellular segmentation is an essential step for the quantitative analysis of highly multiplexed tissue images. Current segmentation pipelines often require manual dataset annotation and additional training, significant paramete...

DeLTA 2.0: A deep learning pipeline for quantifying single-cell spatial and temporal dynamics.

PLoS computational biology
Improvements in microscopy software and hardware have dramatically increased the pace of image acquisition, making analysis a major bottleneck in generating quantitative, single-cell data. Although tools for segmenting and tracking bacteria within ti...

Comparing two artificial intelligence software packages for normative brain volumetry in memory clinic imaging.

Neuroradiology
PURPOSE: To compare two artificial intelligence software packages performing normative brain volumetry and explore whether they could differently impact dementia diagnostics in a clinical context.

Evaluating pointwise reliability of machine learning prediction.

Journal of biomedical informatics
Interest in Machine Learning applications to tackle clinical and biological problems is increasing. This is driven by promising results reported in many research papers, the increasing number of AI-based software products, and by the general interest...

StrVCTVRE: A supervised learning method to predict the pathogenicity of human genome structural variants.

American journal of human genetics
Whole-genome sequencing resolves many clinical cases where standard diagnostic methods have failed. However, at least half of these cases remain unresolved after whole-genome sequencing. Structural variants (SVs; genomic variants larger than 50 base ...

Harnessing protein folding neural networks for peptide-protein docking.

Nature communications
Highly accurate protein structure predictions by deep neural networks such as AlphaFold2 and RoseTTAFold have tremendous impact on structural biology and beyond. Here, we show that, although these deep learning approaches have originally been develop...

Mini-batch optimization enables training of ODE models on large-scale datasets.

Nature communications
Quantitative dynamic models are widely used to study cellular signal processing. A critical step in modelling is the estimation of unknown model parameters from experimental data. As model sizes and datasets are steadily growing, established paramete...

FDA-approved deep learning software application versus radiologists with different levels of expertise: detection of intracranial hemorrhage in a retrospective single-center study.

Neuroradiology
PURPOSE: To assess an FDA-approved and CE-certified deep learning (DL) software application compared to the performance of human radiologists in detecting intracranial hemorrhages (ICH).

PanClassif: Improving pan cancer classification of single cell RNA-seq gene expression data using machine learning.

Genomics
Cancer is one of the major causes of human death per year. In recent years, cancer identification and classification using machine learning have gained momentum due to the availability of high throughput sequencing data. Using RNA-seq, cancer researc...

Technologies bringing young Zebrafish from a niche field to the limelight.

SLAS technology
Fundamental life science and pharmaceutical research are continually striving to provide physiologically relevant context for their biological studies. Zebrafish present an opportunity for high-content screening (HCS) to bring a true in vivo model sy...