AIMC Topic:
Software
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Insights and approaches using deep learning to classify wildlife.
Scientific reports
May 31, 2019
The implementation of intelligent software to identify and classify objects and individuals in visual fields is a technology of growing importance to operatives in many fields, including wildlife conservation and management. To non-experts, the metho...
DeTerm: Software for automatic detection of neuronal dendritic branch terminals via an artificial neural network.
Genes to cells : devoted to molecular & cellular mechanisms
May 28, 2019
Dendrites of neurons receive and process synaptic or sensory inputs. The Drosophila class IV dendritic arborization (da) neuron is an established model system to explore molecular mechanisms of dendrite morphogenesis. The total number of dendritic br...
MHCSeqNet: a deep neural network model for universal MHC binding prediction.
BMC bioinformatics
May 28, 2019
BACKGROUND: Immunotherapy is an emerging approach in cancer treatment that activates the host immune system to destroy cancer cells expressing unique peptide signatures (neoepitopes). Administrations of cancer-specific neoepitopes in the form of synt...
Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning.
Nature methods
May 27, 2019
In mass-spectrometry-based proteomics, the identification and quantification of peptides and proteins heavily rely on sequence database searching or spectral library matching. The lack of accurate predictive models for fragment ion intensities impair...
Exploratory Gene Ontology Analysis with Interactive Visualization.
Scientific reports
May 24, 2019
The Gene Ontology (GO) is a central resource for functional-genomics research. Scientists rely on the functional annotations in the GO for hypothesis generation and couple it with high-throughput biological data to enhance interpretation of results. ...
Prediction of Drug Target Sensitivity in Cancer Cell Lines Using Apache Spark.
Journal of computational biology : a journal of computational molecular cell biology
May 23, 2019
The logic of domains.
Social studies of science
May 23, 2019
The logic of domains has become a key organizing principle for contemporary computing projects and in broader science policy. The logic parses collectives of expertise into 'domains' that are to be studied or engaged in order to inform computational ...
Gene shaving using a sensitivity analysis of kernel based machine learning approach, with applications to cancer data.
PloS one
May 23, 2019
BACKGROUND: Gene shaving (GS) is an essential and challenging tools for biomedical researchers due to the large number of genes in human genome and the complex nature of biological networks. Most GS methods are not applicable to non-linear and multi-...
FaceSync: Open source framework for recording facial expressions with head-mounted cameras.
F1000Research
May 21, 2019
Advances in computer vision and machine learning algorithms have enabled researchers to extract facial expression data from face video recordings with greater ease and speed than standard manual coding methods, which has led to a dramatic increase in...
Identification of clathrin proteins by incorporating hyperparameter optimization in deep learning and PSSM profiles.
Computer methods and programs in biomedicine
May 17, 2019
BACKGROUND AND OBJECTIVES: Clathrin is an adaptor protein that serves as the principal element of the vesicle-coating complex and is important for the membrane cleavage to dispense the invaginated vesicle from the plasma membrane. The functional loss...
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