AIMC Topic:
Software
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CarcinoPred-EL: Novel models for predicting the carcinogenicity of chemicals using molecular fingerprints and ensemble learning methods.
Scientific reports
May 18, 2017
Carcinogenicity refers to a highly toxic end point of certain chemicals, and has become an important issue in the drug development process. In this study, three novel ensemble classification models, namely Ensemble SVM, Ensemble RF, and Ensemble XGBo...
NFPscanner: a webtool for knowledge-based deciphering of biomedical networks.
BMC bioinformatics
May 18, 2017
BACKGROUND: Many biological pathways have been created to represent different types of knowledge, such as genetic interactions, metabolic reactions, and gene-regulating and physical-binding relationships. Biologists are using a wide range of omics da...
Mastery Learning - does the method of learning make a difference in skills acquisition for robotic surgery?
The international journal of medical robotics + computer assisted surgery : MRCAS
May 16, 2017
BACKGROUND: Few studies compare the effectiveness of blocked vs random practice conditions in minimally invasive surgery training, and none have evaluated these in robotic surgery training.
A fuzzy logic-based tool to assess beef cattle ranching sustainability in complex environmental systems.
Journal of environmental management
May 13, 2017
One of the most relevant issues in discussion worldwide nowadays is the concept of sustainability. However, sustainability assessment is a difficult task due to the complexity of factors involved in the natural world added to the human interference. ...
Canary: An NLP Platform for Clinicians and Researchers.
Applied clinical informatics
May 3, 2017
Information Extraction methods can help discover critical knowledge buried in the vast repositories of unstructured clinical data. However, these methods are underutilized in clinical research, potentially due to the absence of free software geared t...
A shallow convolutional neural network for blind image sharpness assessment.
PloS one
May 1, 2017
Blind image quality assessment can be modeled as feature extraction followed by score prediction. It necessitates considerable expertise and efforts to handcraft features for optimal representation of perceptual image quality. This paper addresses bl...
Tool-supported Interactive Correction and Semantic Annotation of Narrative Clinical Reports.
Methods of information in medicine
Apr 28, 2017
OBJECTIVES: Our main objective is to design a method of, and supporting software for, interactive correction and semantic annotation of narrative clinical reports, which would allow for their easier and less erroneous processing outside their origina...
Identification of small molecules using accurate mass MS/MS search.
Mass spectrometry reviews
Apr 24, 2017
Tandem mass spectral library search (MS/MS) is the fastest way to correctly annotate MS/MS spectra from screening small molecules in fields such as environmental analysis, drug screening, lipid analysis, and metabolomics. The confidence in MS/MS-base...
Towards generalizable entity-centric clinical coreference resolution.
Journal of biomedical informatics
Apr 21, 2017
OBJECTIVE: This work investigates the problem of clinical coreference resolution in a model that explicitly tracks entities, and aims to measure the performance of that model in both traditional in-domain train/test splits and cross-domain experiment...
A large-scale benchmark of gene prioritization methods.
Scientific reports
Apr 21, 2017
In order to maximize the use of results from high-throughput experimental studies, e.g. GWAS, for identification and diagnostics of new disease-associated genes, it is important to have properly analyzed and benchmarked gene prioritization tools. Whi...
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