AIMC Topic: Systems Biology

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Hierarchy and levels: analysing networks to study mechanisms in molecular biology.

Philosophical transactions of the Royal Society of London. Series B, Biological sciences
Network representations are flat while mechanisms are organized into a hierarchy of levels, suggesting that the two are fundamentally opposed. I challenge this opposition by focusing on two aspects of the ways in which large-scale networks constructe...

Responses of midbrain auditory neurons to two different environmental sounds-A new approach on cross-sound modeling.

Bio Systems
When modeling auditory responses to environmental sounds, results are satisfactory if both training and testing are restricted to datasets of one type of sound. To predict 'cross-sound' responses (i.e., to predict the response to one type of sound e....

System-Pharmacology Dissection of Traditional Chinese herbs SINI Decoction for Treatment of Cardiovascular Diseases.

Anais da Academia Brasileira de Ciencias
Abstract: Cardiovascular diseases (CVDs) are leading causes of death in the world, owing to noticeable incidence and mortality. Traditional Chinese Medicine (TCM) SINI Decoction (SND) is used to prevent and treat CVDs, which has attracted extensive ...

Facetto: Combining Unsupervised and Supervised Learning for Hierarchical Phenotype Analysis in Multi-Channel Image Data.

IEEE transactions on visualization and computer graphics
Facetto is a scalable visual analytics application that is used to discover single-cell phenotypes in high-dimensional multi-channel microscopy images of human tumors and tissues. Such images represent the cutting edge of digital histology and promis...

Closed-loop cycles of experiment design, execution, and learning accelerate systems biology model development in yeast.

Proceedings of the National Academy of Sciences of the United States of America
One of the most challenging tasks in modern science is the development of systems biology models: Existing models are often very complex but generally have low predictive performance. The construction of high-fidelity models will require hundreds/tho...

The Model of Aging Acceleration Network Reveals the Correlation of Alzheimer's Disease and Aging at System Level.

BioMed research international
As the incidence of senile dementia continues to increase, researches on Alzheimer's disease (AD) have become more and more important. Several studies have reported that there is a close relationship between AD and aging. Some researchers even pointe...

GAIL: An interactive webserver for inference and dynamic visualization of gene-gene associations based on gene ontology guided mining of biomedical literature.

PloS one
In systems biology, inference of functional associations among genes is compelling because the construction of functional association networks facilitates biomarker discovery. Specifically, such gene associations in human can help identify putative b...

Systems Metabolic Engineering Meets Machine Learning: A New Era for Data-Driven Metabolic Engineering.

Biotechnology journal
The recent increase in high-throughput capacity of 'omics datasets combined with advances and interest in machine learning (ML) have created great opportunities for systems metabolic engineering. In this regard, data-driven modeling methods have beco...

Systems biology intertwines with single cell and AI.

BMC bioinformatics
A report of the 12th International Conference on Systems Biology (ISB2018), 18-21 August, Guiyang, China.

Fuzzy logic based approaches for gene regulatory network inference.

Artificial intelligence in medicine
The rapid advancements in high-throughput techniques have fueled large-scale production of biological data at very affordable costs. Some of these techniques are microarrays and next-generation sequencing that provide genome level insight of living c...