Genetics

I-DNAN6mA: Accurate Identification of DNA N-Methyladenine Sites Using the Base-Pairing Map and Deep Learning.

The recent discovery of numerous DNA N-methyladenine (6mA) sites has transformed our perception abou...

Using Haplotype-Based Artificial Intelligence to Evaluate SARS-CoV-2 Novel Variants and Mutations.

IMPORTANCE: Earlier detection of emerging novel SARS-COV-2 variants is important for public health s...

Improving DNA-Binding Protein Prediction Using Three-Part Sequence-Order Feature Extraction and a Deep Neural Network Algorithm.

Identification of the DNA-binding protein (DBP) helps dig out information embedded in the DNA-protei...

Explainable artificial intelligence as a reliable annotator of archaeal promoter regions.

Archaea are a vast and unexplored cellular domain that thrive in a high diversity of environments, h...

Annotation-Free Deep Learning-Based Prediction of Thyroid Molecular Cancer Biomarker BRAF (V600E) from Cytological Slides.

Thyroid cancer is the most common endocrine cancer. Papillary thyroid cancer (PTC) is the most preva...

Detecting genomic deletions from high-throughput sequence data with unsupervised learning.

BACKGROUND: Structural variation (SV), which ranges from 50 bp to [Formula: see text] 3 Mb in size, ...

A universal deep-learning model for zinc finger design enables transcription factor reprogramming.

CysHis zinc finger (ZF) domains engineered to bind specific target sequences in the genome provide a...

DNA Origami Nanostructure Detection and Yield Estimation Using Deep Learning.

DNA origami is a milestone in DNA nanotechnology. It is robust and efficient in constructing arbitra...

Deep Learning for Noninvasive Assessment of H3 K27M Mutation Status in Diffuse Midline Gliomas Using MR Imaging.

BACKGROUND: Determination of H3 K27M mutation in diffuse midline glioma (DMG) is key for prognostic ...

Deep learning identified genetic variants for COVID-19-related mortality among 28,097 affected cases in UK Biobank.

Analysis of host genetic components provides insights into the susceptibility and response to viral ...

Recognizing the power of machine learning and other computational methods to accelerate progress in small molecule targeting of RNA.

RNA structures regulate a wide range of processes in biology and disease, yet small molecule chemica...

A robust and lightweight deep attention multiple instance learning algorithm for predicting genetic alterations.

Self-attention mechanism-based algorithms are attractive in digital pathology due to their interpret...

Major evolutionary transitions in individuality between humans and AI.

That humans might undergo future evolutionary transitions in individuality (ETIs) seems fanciful. Ho...

Comparison of the Diagnostic Performance of Deep Learning Algorithms for Reducing the Time Required for COVID-19 RT-PCR Testing.

(1) Background: Rapid and accurate negative discrimination enables efficient management of scarce is...

Editorial for "Deep Learning for Noninvasive Assessment of H3 K27M Mutation Status in Diffuse Midline Gliomas Using MR Imaging".

Prediction of pathologic complete response to neoadjuvant systemic therapy in triple negative breast cancer using deep learning on multiparametric MRI.

Triple-negative breast cancer (TNBC) is an aggressive subtype of breast cancer. Neoadjuvant systemic...

A radiomics-based deep learning approach to predict progression free-survival after tyrosine kinase inhibitor therapy in non-small cell lung cancer.

BACKGROUND: The epidermal growth factor receptor (EGFR) tyrosine kinase inhibitors (TKIs) are a firs...

Multienzyme deep learning models improve peptide de novo sequencing by mass spectrometry proteomics.

Generating and analyzing overlapping peptides through multienzymatic digestion is an efficient proce...

Smart de novo Macromolecular Structure Modeling from Cryo-EM Maps.

The study of macromolecular structures has expanded our understanding of the amazing cell machinery ...

Drone-assisted collection of environmental DNA from tree branches for biodiversity monitoring.

The protection and restoration of the biosphere is crucial for human resilience and well-being, but ...

MultiScale-CNN-4mCPred: a multi-scale CNN and adaptive embedding-based method for mouse genome DNA N4-methylcytosine prediction.

N4-methylcytosine (4mC) is an important epigenetic mechanism, which regulates many cellular processe...