Genetics

Latest AI and machine learning research in genetics for healthcare professionals.

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Showing 3601-3620 of 14,214 articles

DeepMethyGene: a deep-learning model to predict gene expression using DNA methylations.

Gene expression is the basis for cells to achieve various functions, while DNA methylation constitutes a critical epigenetic mechanism governing gene expression regulation. Here we propose DeepMethyGene, an adaptive recursive convolutional neural network model based on ResNet that predicts gene expression using DNA methylation information. Our model transforms methylation Beta values to M values f...

Apr 8 2025 40200144

Subtractive genomics approach: A guide to unveiling therapeutic targets across pathogens.

Subtractive genomics is an adaptable bioinformatics technique that is used to identify potential therapeutic targets by differentiating essential genes in pathogens and non-pathogenic genes. Since, identification of therapeutic targets and understanding of their structure, function, and role in pathogenesis is important in development of drug design. Therefore, this review will provide a comprehen...

Apr 7 2025 40204082
Integrated bioinformatics analysis to develop diagnostic models for malignant transformation of chronic proliferative diseases.

The combined analysis of dual diseases can provide new insights into pathogenic mechanisms, identify novel biomarkers, and develop targeted therapeuti...

Apr 7 2025 40201199
An integrated AI knowledge graph framework of bacterial enzymology and metabolism.

The study of bacterial metabolism holds immense significance for improving human health and advancing agricultural practices. The prospective applicat...

Apr 7 2025 40193601
CNRein: an evolution-aware deep reinforcement learning algorithm for single-cell DNA copy number calling.

Low-pass single-cell DNA sequencing technologies and algorithmic advancements have enabled haplotype-specific copy number calling on thousands of cell...

Apr 7 2025 40197547
TransBind allows precise detection of DNA-binding proteins and residues using language models and deep learning.

Identifying DNA-binding proteins and their binding residues is critical for understanding diverse biological processes, but conventional experimental ...

Apr 5 2025 40185915
CGLoop: a neural network framework for chromatin loop prediction.

BACKGROUND: Chromosomes of species exhibit a variety of high-dimensional organizational features, and chromatin loops, which are fundamental structure...

Apr 5 2025 40186170
Large-scale bulk and single-cell RNA sequencing combined with machine learning reveals glioblastoma-associated neutrophil heterogeneity and establishes a VEGFA neutrophil prognostic model.

BACKGROUND: Neutrophils play a key role in the tumor microenvironment (TME); however, their functions in glioblastoma (GBM) are overlooked and insuffi...

Apr 5 2025 40188324
Gap-App: A sex-distinct AI-based predictor for pancreatic ductal adenocarcinoma survival as a web application open to patients and physicians.

In this study, using RNA-Seq gene expression data and advanced machine learning techniques, we identified distinct gene expression profiles between ma...

Apr 4 2025 40189015
101 Machine Learning Algorithms for Mining Esophageal Squamous Cell Carcinoma Neoantigen Prognostic Models in Single-Cell Data.

Esophageal squamous cell carcinoma (ESCC) is one of the most aggressive malignant tumors in the digestive tract, characterized by a high recurrence ra...

Apr 4 2025 40244296
SeqNovo: De Novo Peptide Sequencing Prediction in IoMT via Seq2Seq.

In the Internet of Medical Things (IoMT), de novo peptide sequencing prediction is one of the most important techniques for the fields of disease pred...

Apr 4 2025 37792659
RPI-GGCN: Prediction of RNA-Protein Interaction Based on Interpretability Gated Graph Convolution Neural Network and Co-Regularized Variational Autoencoders.

RNA-protein interactions (RPIs) play an important role in several fundamental cellular physiological processes, including cell motility, chromosome re...

Apr 4 2025 38709606
Design and Implementation of Pavlovian Associative Memory Based on DNA Neurons.

In the field of biocomputing and neural networks, deoxyribonucleic acid (DNA) strand displacement (DSD) technology performs well in computation, progr...

Apr 4 2025 38809738
Mitigating ambient RNA and doublets effects on single cell transcriptomics analysis in cancer research.

In cancer biology, where understanding the tumor microenvironment at high resolution is vital, ambient RNA contamination becomes a considerable proble...

Apr 3 2025 40185305
CodonTransformer: a multispecies codon optimizer using context-aware neural networks.

Degeneracy in the genetic code allows many possible DNA sequences to encode the same protein. Optimizing codon usage within a sequence to meet organis...

Apr 3 2025 40180930
Early prediction of neoadjuvant therapy response in breast cancer using MRI-based neural networks: data from the ACRIN 6698 trial and a prospective Chinese cohort.

BACKGROUND: Early prediction of treatment response to neoadjuvant therapy (NAT) in breast cancer patients can facilitate timely adjustment of treatmen...

Apr 3 2025 40181457
The Influence of an AI-Driven Personalized Nutrition Program on the Human Gut Microbiome and Its Health Implications.

Personalized nutrition programs enhanced with artificial intelligence (AI)-based tools hold promising potential for the development of healthy and su...

Apr 3 2025 40219016
Therapeutic potential of allosteric HECT E3 ligase inhibition.

Targeting ubiquitin E3 ligases is therapeutically attractive; however, the absence of an active-site pocket impedes computational approaches for ident...

Apr 2 2025 40179885
Automated segmentation of the dorsal root ganglia in MRI.

The dorsal root ganglion (DRG) contains all primary sensory neurons, but its functional role in somatosensory and pain processing remains unclear. Rec...

Apr 2 2025 40185423
Electrocardiographic Discrimination of Long QT Syndrome Genotypes: A Comparative Analysis and Machine Learning Approach.

Long QT syndrome (LQTS) presents a group of inheritable channelopathies with prolonged ventricular repolarization, leading to syncope, ventricular tac...

Apr 2 2025 40218765
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