Genetics

Complete chloroplast genome of (Rosaceae), a wild flowering cherry endemic to the Himalayan region.

is a species of Prunus native to the Himalayan region. We determined the first complete chloroplast genome of using a genome skimming approach. The cp genome was 157,723 bp long, with a large single-copy region (LSC) of 85,860 bp and a small single-copy region (SSC) of 19,081 bp separated by a pair of inverted repeats (IRs) of 26,391 bp each. It encodes 129 genes, including 84 protein-coding gen...

Characterization of the complete chloroplast genome of (Cupressaceae), an herb to treat lumbar tuberculosis in China.

belongs to the family Cupressaceae that the branches and leaves is an important Traditional Chinese Medicine in China. In this article, the complete chloroplast genome of was studied and illustrated to add the more genetic information. The chloroplast genome of is 1127,113 bp in length as the circular, which exhibits 120 genes, including 83 protein-coding genes (PCG), 33 transfer RNA genes (tRN...

Complete chloroplast genome of (Rosaceae), a wild flowering cherry from Japan.

is a flowering tree species with high ornamental and economic values. We determined the first complete chloroplast genome of using genome skimming a...

Complete chloroplast genome of the wild Japanese Mountain cherry (, Rosaceae).

is a species of Prunus native to eastern Asia. We determined the first complete chloroplast genome of using genome skimming approach. The cp genome ...

The complete chloroplast genome sequence of (Dennstaedtiaceae).

The complete chloroplast DNA sequence of was the first time to report with 150,839 bp in length. The structure of the chloroplast genome is composed ...

Research Note: Longitudinal monitoring of chicken houses in a commercial layer farm for antimicrobial resistance in Escherichia coli with special reference to plasmid-mediated quinolone resistance.

Plasmid-mediated quinolone resistance (PMQR) genes located on conjugative plasmids can be transferred to other bacteria in the absence of antimicrobia...

DeepSV: accurate calling of genomic deletions from high-throughput sequencing data using deep convolutional neural network.

BACKGROUND: Calling genetic variations from sequence reads is an important problem in genomics. There are many existing methods for calling various ty...

A comparison between two semantic deep learning frameworks for the autosomal dominant polycystic kidney disease segmentation based on magnetic resonance images.

BACKGROUND: The automatic segmentation of kidneys in medical images is not a trivial task when the subjects undergoing the medical examination are aff...

A Deep Learning Model for Cell Growth Inhibition IC50 Prediction and Its Application for Gastric Cancer Patients.

Heterogeneity in intratumoral cancers leads to discrepancies in drug responsiveness, due to diverse genomics profiles. Thus, prediction of drug respon...

Identification of aberrantly methylated‑differentially expressed genes and gene ontology in prostate cancer.

Prostate cancer (PCa) is the most frequent urological malignancy in men worldwide. DNA methylation has an essential role in the etiology and pathogene...

Hollow Alginate-Poly-L-Lysine-Alginate Microspheres Promoted an Epithelial-Mesenchymal Transition in Human Colon Adenocarcinoma Cells.

Today, there is an urgent need to develop a three-dimentional culture systems mimicking native condition in order to screen potency of drugs and pos...

Machine-learning based patient classification using Hepatitis B virus full-length genome quasispecies from Asian and European cohorts.

Chronic infection with Hepatitis B virus (HBV) is a major risk factor for the development of advanced liver disease including fibrosis, cirrhosis, and...

Effective machine-learning assembly for next-generation amplicon sequencing with very low coverage.

BACKGROUND: In short-read DNA sequencing experiments, the read coverage is a key parameter to successfully assemble the reads and reconstruct the sequ...

PharmVar GeneFocus: CYP2D6.

The Pharmacogene Variation Consortium (PharmVar) provides nomenclature for the highly polymorphic human CYP2D6 gene locus. CYP2D6 genetic variation im...

The complete chloroplast genome of , lights into phylogenetic and taxonomic analyses.

a precious endangered species in China, it has a long history of growth and high ornamental and edible value. In this study, we reported a complete c...

Discovery and annotation of novel microRNAs in the porcine genome by using a semi-supervised transductive learning approach.

Despite the broad variety of available microRNA (miRNA) prediction tools, their application to the discovery and annotation of novel miRNA genes in do...

Identifying pseudoenzymes using functional annotation: pitfalls of common practice.

Pseudoenzymes are proteins that are evolutionary related to enzymes but lack relevant catalytic activity. They are usually evolved from enzymatic ance...

Predictive models for patients with lung carcinomas to identify EGFR mutation status via an artificial neural network based on multiple clinical information.

PURPOSE: Epidermal growth factor receptor (EGFR) mutation testing has several limitations. Therefore, we built predictive models to determine the EGFR...

Global transcriptome analysis reveals relevant effects at environmental concentrations of cypermethrin in honey bees (Apis mellifera).

Cypermethrin is a frequently used insecticide in agriculture and households but its chronic and molecular effects are poorly known are . Here we descr...

Filtering maxRatio results with machine learning models increases quantitative PCR accuracy over the fit point method.

With qPCR reaching thousands of reactions per run, assay validation needs automation. We applied support vector machine to qPCR analysis and we could ...