Genetics

Latest AI and machine learning research in genetics for healthcare professionals.

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OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking

The code of nature, embedded in DNA and RNA genomes since the origin of life, holds immense potential to impact both humans and ecosystems through genome modeling. Genomic Foundation Models (GFMs) have emerged as a transformative approach to decoding the genome. As GFMs scale up and reshape the landscape of AI-driven genomics, the field faces an urgent need for rigorous and reproducible evaluati...

Pantheon: Personalized Multi-objective Ensemble Sort via Iterative Pareto Policy Optimization

In this paper, we provide our milestone ensemble sort work and the first-hand practical experience, Pantheon, which transforms ensemble sorting from a "human-curated art" to a "machine-optimized science". Compared with formulation-based ensemble sort, our Pantheon has the following advantages: (1) Personalized Joint Training: our Pantheon is jointly trained with the real-time ranking model, whic...

AI-Driven Multiscale Study on the Mechanism of Polygonati Rhizoma in Regulating Immune Function in STAD.

Polygonati Rhizoma, a traditional Chinese medicine, has demonstrated immunomodulatory and anticancer properties, yet its precise mechanisms in stomach...

May 20 2025 40415801
Scmaskgan: masked multi-scale CNN and attention-enhanced GAN for scRNA-seq dropout imputation.

Single-cell RNA sequencing (scRNA-seq) enables high-resolution analysis of cellular heterogeneity, but dropout events, where gene expression is undete...

May 20 2025 40394489
A Digital Score Based on Circulating-Tumor-Cells-Derived mRNA Quantification and Machine Learning for Early Colorectal Cancer Detection.

Circulating tumor cells (CTCs) serve as valuable biomarkers in tumor circulation, carrying essential primary tumor information. The purification of CT...

May 20 2025 40335073
Van der Waals Inverted-Floating-Gate Transistors for Artificial Intelligence Electronics.

An inverted floating gate device architecture is introduced, demonstrated with all-van-der-Waals technology, targeting both logic and neuromorphic cir...

May 20 2025 40353365
HR-VILAGE-3K3M: A Human Respiratory Viral Immunization Longitudinal Gene Expression Dataset for Systems Immunity

Respiratory viral infections pose a global health burden, yet the cellular immune responses driving protection or pathology remain unclear. Natural ...

Any-to-Any Learning in Computational Pathology via Triplet Multimodal Pretraining

Recent advances in computational pathology and artificial intelligence have significantly enhanced the utilization of gigapixel whole-slide images a...

ChromFound: Towards A Universal Foundation Model for Single-Cell Chromatin Accessibility Data

The advent of single-cell Assay for Transposase-Accessible Chromatin using sequencing (scATAC-seq) offers an innovative perspective for deciphering ...

scSiameseClu: A Siamese Clustering Framework for Interpreting single-cell RNA Sequencing Data

Single-cell RNA sequencing (scRNA-seq) reveals cell heterogeneity, with cell clustering playing a key role in identifying cell types and marker gene...

Activation of the Carotid Body by Kappa Opioid Receptors Mitigates Fentanyl-Induced Respiratory Depression.

Previous studies reported that opioids depress breathing by inhibiting respiratory neural networks in the brainstem. The effects of opioids on sensory...

May 19 2025 40378144
Multi-CALF: A Policy Combination Approach with Statistical Guarantees

We introduce Multi-CALF, an algorithm that intelligently combines reinforcement learning policies based on their relative value improvements. Our ap...

Structureless VIO

Visual odometry (VO) is typically considered as a chicken-and-egg problem, as the localization and mapping modules are tightly-coupled. The estimati...

CREATE: cell-type-specific cis-regulatory element identification via discrete embedding.

Cis-regulatory elements (CREs), including enhancers, silencers, promoters and insulators, play pivotal roles in orchestrating gene regulatory mechanis...

May 17 2025 40382355
Machine learning and single-cell analysis uncover distinctive characteristics of CD300LG within the TNBC immune microenvironment: experimental validation.

Investigating the essential function of CD300LG within the tumor microenvironment in triple-negative breast cancer (TNBC). Transcriptomic and single-c...

May 17 2025 40382513
Mollifier Layers: Enabling Efficient High-Order Derivatives in Inverse PDE Learning

Parameter estimation in inverse problems involving partial differential equations (PDEs) underpins modeling across scientific disciplines, especiall...

In silico tool for identification of colorectal cancer from cell-free DNA biomarkers

Colorectal cancer remains a major global health concern, with early detection being pivotal for improving patient outcomes. In this study, we levera...

GenoArmory: A Unified Evaluation Framework for Adversarial Attacks on Genomic Foundation Models

We propose the first unified adversarial attack benchmark for Genomic Foundation Models (GFMs), named GenoArmory. Unlike existing GFM benchmarks, Ge...

Foundation model for mass spectrometry proteomics

Mass spectrometry is the dominant technology in the field of proteomics, enabling high-throughput analysis of the protein content of complex biologi...

Deep Learning-Based Classification of CRISPR Loci Using Repeat Sequences.

With the widespread application of the CRISPR-Cas system in gene editing and related fields, along with the increasing availability of metagenomic dat...

May 16 2025 40261207
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