AIMC Topic: Bacteria

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Antimicrobial resistance: Linking molecular mechanisms to public health impact.

SLAS discovery : advancing life sciences R & D
BACKGROUND: Antimicrobial resistance (AMR) develops into a worldwide health emergency through genetic and biochemical adaptations which enable microorganisms to resist antimicrobial treatment. β-lactamases (blaNDM, blaKPC) and efflux pumps (MexAB-Opr...

Synergistic effect of horizontal transfer of antibiotic resistance genes between bacteria exposed to microplastics and per/polyfluoroalkyl substances: An explanation from theoretical methods.

Journal of hazardous materials
Microplastics (MPs) and per/polyfluoroalkyl substances (PFASs), as emerging pollutants widely present in aquatic environments, pose a significant threat to human health through the horizontal gene transfer (HGT) of antibiotic resistance genes (ARGs)....

Subtractive genomics approach: A guide to unveiling therapeutic targets across pathogens.

Journal of microbiological methods
Subtractive genomics is an adaptable bioinformatics technique that is used to identify potential therapeutic targets by differentiating essential genes in pathogens and non-pathogenic genes. Since, identification of therapeutic targets and understand...

An integrated AI knowledge graph framework of bacterial enzymology and metabolism.

Proceedings of the National Academy of Sciences of the United States of America
The study of bacterial metabolism holds immense significance for improving human health and advancing agricultural practices. The prospective applications of genomically encoded bacterial metabolism present a compelling opportunity, particularly in t...

Gut microbiota shift in Ghanaian individuals along the migration axis: the RODAM-Pros cohort.

Gut microbes
Migration is associated with a substantial change in environmental exposures and health outcomes. We aimed to investigate the shift in gut microbiota composition and the associations with cardiometabolic outcomes in the RODAM-Pros cohort spanning mul...

The Influence of an AI-Driven Personalized Nutrition Program on the Human Gut Microbiome and Its Health Implications.

Nutrients
Personalized nutrition programs enhanced with artificial intelligence (AI)-based tools hold promising potential for the development of healthy and sustainable diets and for disease prevention. This study aimed to explore the impact of an AI-based pe...

Rapid and accurate identification of foodborne bacteria: a combined approach using confocal Raman micro-spectroscopy and explainable machine learning.

Analytical and bioanalytical chemistry
This study proposes a rapid identification method for foodborne pathogens by combining Raman spectroscopy with explainable machine learning. Spectral data of nine common foodborne pathogens are collected using a laser confocal Raman spectrometer, and...

Modeling microbiome-trait associations with taxonomy-adaptive neural networks.

Microbiome
The human microbiome, a complex ecosystem of microorganisms inhabiting the body, plays a critical role in human health. Investigating its association with host traits is essential for understanding its impact on various diseases. Although shotgun met...

Colonial bacterial memetic algorithm and its application on a darts playing robot.

Scientific reports
In this paper, we present the Colonial Bacterial Memetic Algorithm (CBMA), an advanced evolutionary optimization approach for robotic applications. CBMA extends the Bacterial Memetic Algorithm by integrating Cultural Algorithms and co-evolutionary dy...

aurora: a machine learning gwas tool for analyzing microbial habitat adaptation.

Genome biology
A primary goal of microbial genome-wide association studies is identifying genomic variants associated with a particular habitat. Existing tools fail to identify known causal variants if the analyzed trait shaped the phylogeny. Furthermore, due to in...