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Biodiversity

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Biodiversity assessment using passive acoustic recordings from off-reef location-Unsupervised learning to classify fish vocalization.

The Journal of the Acoustical Society of America
We present the quantitative characterization of Grande Island's off-reef acoustic environment within the Zuari estuary during the pre-monsoon period. Passive acoustic recordings reveal prominent fish choruses. Detailed characteristics of the call emp...

Text-mined fossil biodiversity dynamics using machine learning.

Proceedings. Biological sciences
Documented occurrences of fossil taxa are the empirical foundation for understanding large-scale biodiversity changes and evolutionary dynamics in deep time. The fossil record contains vast amounts of understudied taxa. Yet the compilation of huge vo...

Parsing human and biophysical drivers of coral reef regimes.

Proceedings. Biological sciences
Coral reefs worldwide face unprecedented cumulative anthropogenic effects of interacting local human pressures, global climate change and distal social processes. Reefs are also bound by the natural biophysical environment within which they exist. In...

Predicting reservoir hosts and arthropod vectors from evolutionary signatures in RNA virus genomes.

Science (New York, N.Y.)
Identifying the animal origins of RNA viruses requires years of field and laboratory studies that stall responses to emerging infectious diseases. Using large genomic and ecological datasets, we demonstrate that animal reservoirs and the existence an...

The anatomy of phenotype ontologies: principles, properties and applications.

Briefings in bioinformatics
The past decade has seen an explosion in the collection of genotype data in domains as diverse as medicine, ecology, livestock and plant breeding. Along with this comes the challenge of dealing with the related phenotype data, which is not only large...

Actionable, long-term stable and semantic web compatible identifiers for access to biological collection objects.

Database : the journal of biological databases and curation
UNLABELLED: With biodiversity research activities being increasingly shifted to the web, the need for a system of persistent and stable identifiers for physical collection objects becomes increasingly pressing. The Consortium of European Taxonomic Fa...

[Screening and identification of antioxidant endophytes from Lycium barbarum of Ningxia].

Zhongguo Zhong yao za zhi = Zhongguo zhongyao zazhi = China journal of Chinese materia medica
In this paper, 29 endophytes were isolated from different organs and tissues of Lycium barbarum of Ningxia by tablet coating method, 18 of them was fungi, and 11 of them was actinomycetes. The endophytes quantity in the different tissues were leaves ...