AIMC Topic: Biological Ontologies

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Using Compact Coevolutionary Algorithm for Matching Biomedical Ontologies.

Computational intelligence and neuroscience
Over the recent years, ontologies are widely used in various domains such as medical records annotation, medical knowledge representation and sharing, clinical guideline management, and medical decision-making. To implement the cooperation between in...

Ontoserver: a syndicated terminology server.

Journal of biomedical semantics
BACKGROUND: Even though several high-quality clinical terminologies, such as SNOMED CT and LOINC, are readily available, uptake in clinical systems has been slow and many continue to capture information in plain text or using custom terminologies. Th...

Linked open data-based framework for automatic biomedical ontology generation.

BMC bioinformatics
BACKGROUND: Fulfilling the vision of Semantic Web requires an accurate data model for organizing knowledge and sharing common understanding of the domain. Fitting this description, ontologies are the cornerstones of Semantic Web and can be used to so...

Supporting biomedical ontology evolution by identifying outdated concepts and the required type of change.

Journal of biomedical informatics
The consistent evolution of ontologies is a major challenge for systems using semantically enriched data, for example, for annotating, indexing, or reasoning. The biomedical domain is a typical example where ontologies, expressed with different forma...

Using predicate and provenance information from a knowledge graph for drug efficacy screening.

Journal of biomedical semantics
BACKGROUND: Biomedical knowledge graphs have become important tools to computationally analyse the comprehensive body of biomedical knowledge. They represent knowledge as subject-predicate-object triples, in which the predicate indicates the relation...

EEG-Based Automatic Sleep Staging Using Ontology and Weighting Feature Analysis.

Computational and mathematical methods in medicine
Sleep staging is considered as an effective indicator for auxiliary diagnosis of sleep diseases and related psychiatric diseases, so it attracts a lot of attention from sleep researchers. Nevertheless, sleep staging based on visual inspection of trad...

Representing vaccine misinformation using ontologies.

Journal of biomedical semantics
BACKGROUND: In this paper, we discuss the design and development of a formal ontology to describe misinformation about vaccines. Vaccine misinformation is one of the drivers leading to vaccine hesitancy in patients. While there are various levels of ...

SNOMED CT standard ontology based on the ontology for general medical science.

BMC medical informatics and decision making
BACKGROUND: Systematized Nomenclature of Medicine-Clinical Terms (SNOMED CT, hereafter abbreviated SCT) is a comprehensive medical terminology used for standardizing the storage, retrieval, and exchange of electronic health data. Some efforts have be...