AIMC Topic: Biological Ontologies

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Representing vaccine misinformation using ontologies.

Journal of biomedical semantics Aug 31, 2018
BACKGROUND: In this paper, we discuss the design and development of a formal ontology to describe misinformation about vaccines. Vaccine misinformation is one of the drivers leading to vaccine hesitancy in patients. While there are various levels of ...
Biological Ontologies Patient Acceptance of Health Care Vaccines Semantics Communication Humans
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SNOMED CT standard ontology based on the ontology for general medical science.

BMC medical informatics and decision making Aug 31, 2018
BACKGROUND: Systematized Nomenclature of Medicine-Clinical Terms (SNOMED CT, hereafter abbreviated SCT) is a comprehensive medical terminology used for standardizing the storage, retrieval, and exchange of electronic health data. Some efforts have be...
Systematized Nomenclature of Medicine Biological Ontologies Biomedical Research Decision Support Systems, Clinical Humans Electronic Health Records
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As Ontologies Reach Maturity, Artificial Intelligence Starts Being Fully Efficient: Findings from the Section on Knowledge Representation and Management for the Yearbook 2018.

Yearbook of medical informatics Aug 29, 2018
OBJECTIVES:  To select, present, and summarize the best papers published in 2017 in the field of Knowledge Representation and Management (KRM).
Genetic Association Studies Datasets as Topic Humans Artificial Intelligence Gene Ontology Biological Ontologies
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Disease Specific Ontology of Adverse Events: Ontology extension and adaptation for Chronic Kidney Disease.

Computers in biology and medicine Aug 28, 2018
BACKGROUND: Adverse Event (AE) ontology can be used to support interoperability and computer-assisted reasoning of AEs. Despite significant progress in developing biomedical ontologies, they are facing the obstacle of adoption partly because those on...
Renal Insufficiency, Chronic Models, Biological Female Humans Biological Ontologies Male Artificial Intelligence
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The radiation oncology ontology (ROO): Publishing linked data in radiation oncology using semantic web and ontology techniques.

Medical physics Aug 24, 2018
PURPOSE: Personalized medicine is expected to yield improved health outcomes. Data mining over massive volumes of patients' clinical data is an appealing, low-cost and noninvasive approach toward personalization. Machine learning algorithms could be ...
Radiation Oncology Clinical Trials as Topic Humans Rectal Neoplasms Publications Semantic Web Biological Ontologies
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Automated ontology generation framework powered by linked biomedical ontologies for disease-drug domain.

Computer methods and programs in biomedicine Aug 16, 2018
OBJECTIVE AND BACKGROUND: The exponential growth of the unstructured data available in biomedical literature, and Electronic Health Record (EHR), requires powerful novel technologies and architectures to unlock the information hidden in the unstructu...
Semantics Biological Ontologies Disease Drug Therapy Knowledge Bases Data Mining Machine Learning Algorithms Decision Support Systems, Clinical Humans
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Biomedical ontology alignment: an approach based on representation learning.

Journal of biomedical semantics Aug 15, 2018
BACKGROUND: While representation learning techniques have shown great promise in application to a number of different NLP tasks, they have had little impact on the problem of ontology matching. Unlike past work that has focused on feature engineering...
Machine Learning Biological Ontologies
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EAPB: entropy-aware path-based metric for ontology quality.

Journal of biomedical semantics Aug 10, 2018
BACKGROUND: Entropy has become increasingly popular in computer science and information theory because it can be used to measure the predictability and redundancy of knowledge bases, especially ontologies. However, current entropy applications that e...
Biological Ontologies Entropy Humans Communicable Diseases
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Evaluating semantic relations in neural word embeddings with biomedical and general domain knowledge bases.

BMC medical informatics and decision making Jul 23, 2018
BACKGROUND: In the past few years, neural word embeddings have been widely used in text mining. However, the vector representations of word embeddings mostly act as a black box in downstream applications using them, thereby limiting their interpretab...
Semantics Biological Ontologies Unified Medical Language System Natural Language Processing Knowledge Bases Data Mining
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CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata.

BMC bioinformatics Jul 16, 2018
BACKGROUND: Public biomedical data repositories often provide web-based interfaces to collect experimental metadata. However, these interfaces typically reflect the ad hoc metadata specification practices of the associated repositories, leading to a ...
Internet Metadata Software Algorithms Biological Ontologies Humans
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