AIMC Topic: Caenorhabditis elegans

Clear Filters Showing 51 to 60 of 102 articles

3DeeCellTracker, a deep learning-based pipeline for segmenting and tracking cells in 3D time lapse images.

eLife
Despite recent improvements in microscope technologies, segmenting and tracking cells in three-dimensional time-lapse images (3D + T images) to extract their dynamic positions and activities remains a considerable bottleneck in the field. We develope...

Deep learning the collisional cross sections of the peptide universe from a million experimental values.

Nature communications
The size and shape of peptide ions in the gas phase are an under-explored dimension for mass spectrometry-based proteomics. To investigate the nature and utility of the peptide collisional cross section (CCS) space, we measure more than a million dat...

Real-time volumetric reconstruction of biological dynamics with light-field microscopy and deep learning.

Nature methods
Light-field microscopy has emerged as a technique of choice for high-speed volumetric imaging of fast biological processes. However, artifacts, nonuniform resolution and a slow reconstruction speed have limited its full capabilities for in toto extra...

SSnet: A Deep Learning Approach for Protein-Ligand Interaction Prediction.

International journal of molecular sciences
Computational prediction of Protein-Ligand Interaction (PLI) is an important step in the modern drug discovery pipeline as it mitigates the cost, time, and resources required to screen novel therapeutics. Deep Neural Networks (DNN) have recently show...

Improving skeleton algorithm for helping Caenorhabditis elegans trackers.

Scientific reports
One of the main problems when monitoring Caenorhabditis elegans nematodes (C. elegans) is tracking their poses by automatic computer vision systems. This is a challenge given the marked flexibility that their bodies present and the different poses th...

Establishment of a morphological atlas of the Caenorhabditis elegans embryo using deep-learning-based 4D segmentation.

Nature communications
The invariant development and transparent body of the nematode Caenorhabditis elegans enables complete delineation of cell lineages throughout development. Despite extensive studies of cell division, cell migration and cell fate differentiation, cell...

Identifying longevity associated genes by integrating gene expression and curated annotations.

PLoS computational biology
Aging is a complex process with poorly understood genetic mechanisms. Recent studies have sought to classify genes as pro-longevity or anti-longevity using a variety of machine learning algorithms. However, it is not clear which types of features are...

Deep learning-enabled analysis reveals distinct neuronal phenotypes induced by aging and cold-shock.

BMC biology
BACKGROUND: Access to quantitative information is crucial to obtain a deeper understanding of biological systems. In addition to being low-throughput, traditional image-based analysis is mostly limited to error-prone qualitative or semi-quantitative ...

Accurate prediction of DNA N-methylcytosine sites via boost-learning various types of sequence features.

BMC genomics
BACKGROUND: DNA N4-methylcytosine (4mC) is a critical epigenetic modification and has various roles in the restriction-modification system. Due to the high cost of experimental laboratory detection, computational methods using sequence characteristic...

Discriminating between sleep and exercise-induced fatigue using computer vision and behavioral genetics.

Journal of neurogenetics
Following prolonged swimming, cycle between active swimming bouts and inactive quiescent bouts. Swimming is exercise for and here we suggest that inactive bouts are a recovery state akin to fatigue. It is known that cGMP-dependent kinase (PKG) acti...