AIMC Topic: Computational Biology

Clear Filters Showing 2081 to 2090 of 4583 articles

Evaluating Deep Learning models for predicting ALK-5 inhibition.

PloS one
Computational methods have been widely used in drug design. The recent developments in machine learning techniques and the ever-growing chemical and biological databases are fertile ground for discoveries in this area. In this study, we evaluated the...

Classification of colorectal tissue images from high throughput tissue microarrays by ensemble deep learning methods.

Scientific reports
Tissue microarray (TMA) core images are a treasure trove for artificial intelligence applications. However, a common problem of TMAs is multiple sectioning, which can change the content of the intended tissue core and requires re-labelling. Here, we ...

Sparse deep predictive coding captures contour integration capabilities of the early visual system.

PLoS computational biology
Both neurophysiological and psychophysical experiments have pointed out the crucial role of recurrent and feedback connections to process context-dependent information in the early visual cortex. While numerous models have accounted for feedback effe...

Predicting Tumor Cell Response to Synergistic Drug Combinations Using a Novel Simplified Deep Learning Model.

AMIA ... Annual Symposium proceedings. AMIA Symposium
Drug combinations targeting multiple targets/pathways are believed to be able to reduce drug resistance. Computational models are essential for novel drug combination discovery. In this study, we proposed a new simplified deep learning model, for dr...

Machine Learning Analysis of Longevity-Associated Gene Expression Landscapes in Mammals.

International journal of molecular sciences
One of the important questions in aging research is how differences in transcriptomics are associated with the longevity of various species. Unfortunately, at the level of individual genes, the links between expression in different organs and maximum...

Detecting operons in bacterial genomes via visual representation learning.

Scientific reports
Contiguous genes in prokaryotes are often arranged into operons. Detecting operons plays a critical role in inferring gene functionality and regulatory networks. Human experts annotate operons by visually inspecting gene neighborhoods across pileups ...

MVP predicts the pathogenicity of missense variants by deep learning.

Nature communications
Accurate pathogenicity prediction of missense variants is critically important in genetic studies and clinical diagnosis. Previously published prediction methods have facilitated the interpretation of missense variants but have limited performance. H...

Reference-Driven Undersampled MR Image Reconstruction Using Wavelet Sparsity-Constrained Deep Image Prior.

Computational and mathematical methods in medicine
Deep learning has shown potential in significantly improving performance for undersampled magnetic resonance (MR) image reconstruction. However, one challenge for the application of deep learning to clinical scenarios is the requirement of large, hig...

Prediction of Protein-ATP Binding Residues Based on Ensemble of Deep Convolutional Neural Networks and LightGBM Algorithm.

International journal of molecular sciences
Accurately identifying protein-ATP binding residues is important for protein function annotation and drug design. Previous studies have used classic machine-learning algorithms like support vector machine (SVM) and random forest to predict protein-AT...

DeepLPI: a multimodal deep learning method for predicting the interactions between lncRNAs and protein isoforms.

BMC bioinformatics
BACKGROUND: Long non-coding RNAs (lncRNAs) regulate diverse biological processes via interactions with proteins. Since the experimental methods to identify these interactions are expensive and time-consuming, many computational methods have been prop...