AIMC Topic: Data Mining

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Relation Extraction in Biomedical Texts: A Cross-Sentence Approach.

IEEE/ACM transactions on computational biology and bioinformatics
Relation extraction, a crucial task in understanding the intricate relationships between entities in biomedical domains, has predominantly focused on binary relations within single sentences. However, in practical biomedical scenarios, relationships ...

Contrasting Multi-Source Temporal Knowledge Graphs for Biomedical Hypothesis Generation.

IEEE/ACM transactions on computational biology and bioinformatics
Hypothesis Generation (HG) aims to expedite biomedical researches by generating novel hypotheses from existing scientific literature. Most existing studies focused on modeling static snapshots of the corpus, neglecting the temporal evolution of scien...

Integrating K+ Entities Into Coreference Resolution on Biomedical Texts.

IEEE/ACM transactions on computational biology and bioinformatics
Biomedical Coreference Resolution focuses on identifying the coreferences in biomedical texts, which normally consists of two parts: (i) mention detection to identify textual representation of biological entities and (ii) finding their coreference li...

Joint Extraction of Biomedical Events Based on Dynamic Path Planning Strategy and Hybrid Neural Network.

IEEE/ACM transactions on computational biology and bioinformatics
Biomedical event detection is a pivotal information extraction task in molecular biology and biomedical research, which provides inspiration for the medical search, disease prevention, and new drug development. The existing methods usually detect sim...

Enhancing Generalizability in Biomedical Entity Recognition: Self-Attention PCA-CLS Model.

IEEE/ACM transactions on computational biology and bioinformatics
One of the primary tasks in the early stages of data mining involves the identification of entities from biomedical corpora. Traditional approaches relying on robust feature engineering face challenges when learning from available (un-)annotated data...

Distantly Supervised Biomedical Relation Extraction via Negative Learning and Noisy Student Self-Training.

IEEE/ACM transactions on computational biology and bioinformatics
Biomedical relation extraction aims to identify underlying relationships among entities, such as gene associations and drug interactions, within biomedical texts. Despite advancements in relation extraction in general knowledge domains, the scarcity ...

Utility of a Large Language Model for Extraction of Clinical Findings from Healthcare Data following Lung Ablation: A Feasibility Study.

Journal of vascular and interventional radiology : JVIR
To assess the feasibility of utilizing a large language model (LLM) in extracting clinically relevant information from healthcare data in patients who have undergone microwave ablation for lung tumors. In this single-center retrospective study, radio...

Enhancing suicidal behavior detection in EHRs: A multi-label NLP framework with transformer models and semantic retrieval-based annotation.

Journal of biomedical informatics
BACKGROUND: Suicide is a leading cause of death worldwide, making early identification of suicidal behaviors crucial for clinicians. Current Natural Language Processing (NLP) approaches for identifying suicidal behaviors in Electronic Health Records ...

A multimodal approach for few-shot biomedical named entity recognition in low-resource languages.

Journal of biomedical informatics
In this study, we revisit named entity recognition (NER) in the biomedical domain from a multimodal perspective, with a particular focus on applications in low-resource languages. Existing research primarily relies on unimodal methods for NER, which ...

Biomedical document-level relation extraction with thematic capture and localized entity pooling.

Journal of biomedical informatics
In contrast to sentence-level relational extraction, document-level relation extraction poses greater challenges as a document typically contains multiple entities, and one entity may be associated with multiple other entities. Existing methods often...