We present the coronary artery disease (CAD) database, a comprehensive resource, comprising 126 papers and 68 datasets relevant to CAD diagnosis, extracted from the scientific literature from 1992 and 2018. These data were collected to help advance r...
Temporal relations are crucial in constructing a timeline over the course of clinical care, which can help medical practitioners and researchers track the progression of diseases, treatments and adverse reactions over time. Due to the rapid adoption ...
Social media has been identified as a promising potential source of information for pharmacovigilance. The adoption of social media data has been hindered by the massive and noisy nature of the data. Initial attempts to use social media data have rel...
OBJECTIVE: To comparatively evaluate a range of Natural Language Processing (NLP) approaches for Information Extraction (IE) of low-prevalence concepts in clinical notes on the example of decline of insulin therapy recommendation by patients.
BACKGROUND: Rare diseases (RD) result in a wide variety of clinical presentations, and this creates a significant diagnostic challenge for health care professionals. We hypothesized that there exist a set of consistent and shared phenomena among all ...
Gene and protein expressions are key determinants of cellular function. Neurons are the building blocks of brain circuits, yet the relationship between their molecular identity and the spatial distribution of their dendritic inputs and axonal outputs...
Computer methods and programs in biomedicine
Oct 4, 2019
BACKGROUND AND OBJECTIVE: Capturing the context of text is a challenging task in biomedical text summarization. The objective of this research is to show how contextualized embeddings produced by a deep bidirectional language model can be utilized to...
Drug-drug interactions are critical in studying drug side effects. Thus, quickly and accurately identifying the relationship between drugs is necessary. Current methods for biomedical relation extraction include only the sequential information of sen...
Stroke represents a major health problem in our society. One of the effects of stroke is foot drop. Foot drop (FD) is a weakness that occurs in specific muscles in the ankle and foot such as the anterior tibialis, gastrocnemius, plantaris and soleus ...
Clinical named entity recognition (CNER), which intends to automatically detect clinical entities in electronic health record (EHR), is a committed step for further clinical text mining. Recently, more and more deep learning models are used to Chines...
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