AIMC Topic: Data Mining

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User recommendation in healthcare social media by assessing user similarity in heterogeneous network.

Artificial intelligence in medicine
OBJECTIVE: The rapid growth of online health social websites has captured a vast amount of healthcare information and made the information easy to access for health consumers. E-patients often use these social websites for informational and emotional...

BioFed: federated query processing over life sciences linked open data.

Journal of biomedical semantics
BACKGROUND: Biomedical data, e.g. from knowledge bases and ontologies, is increasingly made available following open linked data principles, at best as RDF triple data. This is a necessary step towards unified access to biological data sets, but this...

Ontology-based literature mining of E. coli vaccine-associated gene interaction networks.

Journal of biomedical semantics
BACKGROUND: Pathogenic Escherichia coli infections cause various diseases in humans and many animal species. However, with extensive E. coli vaccine research, we are still unable to fully protect ourselves against E. coli infections. To more rational...

Artificial Neural Network System to Predict the Postoperative Outcome of Percutaneous Nephrolithotomy.

Journal of endourology
PURPOSE: To construct, train, and apply an artificial neural network (ANN) system for prediction of different outcome variables of percutaneous nephrolithotomy (PCNL). We calculated predictive accuracy, sensitivity, and precision for each outcome var...

Extracting microRNA-gene relations from biomedical literature using distant supervision.

PloS one
Many biomedical relation extraction approaches are based on supervised machine learning, requiring an annotated corpus. Distant supervision aims at training a classifier by combining a knowledge base with a corpus, reducing the amount of manual effor...

Therapeutic indications and other use-case-driven updates in the drug ontology: anti-malarials, anti-hypertensives, opioid analgesics, and a large term request.

Journal of biomedical semantics
BACKGROUND: The Drug Ontology (DrOn) is an OWL2-based representation of drug products and their ingredients, mechanisms of action, strengths, and dose forms. We originally created DrOn for use cases in comparative effectiveness research, primarily to...

Optimization on machine learning based approaches for sentiment analysis on HPV vaccines related tweets.

Journal of biomedical semantics
BACKGROUND: Analysing public opinions on HPV vaccines on social media using machine learning based approaches will help us understand the reasons behind the low vaccine coverage and come up with corresponding strategies to improve vaccine uptake.

RNA-protein binding motifs mining with a new hybrid deep learning based cross-domain knowledge integration approach.

BMC bioinformatics
BACKGROUND: RNAs play key roles in cells through the interactions with proteins known as the RNA-binding proteins (RBP) and their binding motifs enable crucial understanding of the post-transcriptional regulation of RNAs. How the RBPs correctly recog...

A novel hierarchical selective ensemble classifier with bioinformatics application.

Artificial intelligence in medicine
Selective ensemble learning is a technique that selects a subset of diverse and accurate basic models in order to generate stronger generalization ability. In this paper, we proposed a novel learning algorithm that is based on parallel optimization a...

Classifier transfer with data selection strategies for online support vector machine classification with class imbalance.

Journal of neural engineering
OBJECTIVE: Classifier transfers usually come with dataset shifts. To overcome dataset shifts in practical applications, we consider the limitations in computational resources in this paper for the adaptation of batch learning algorithms, like the sup...