AIMC Topic: Databases, Genetic

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Ab initio GO-based mining for non-tandem-duplicated functional clusters in three model plant diploid genomes.

PloS one
A functional Non-Tandem Duplicated Cluster (FNTDC) is a group of non-tandem-duplicated genes that are located closer than expected by mere chance and have a role in the same biological function. The identification of secondary-compounds-related FNTDC...

A Support Vector Machine Model Predicting the Risk of Duodenal Cancer in Patients with Familial Adenomatous Polyposis at the Transcript Levels.

BioMed research international
OBJECTIVE: Familial adenomatous polyposis (FAP) is one major type of inherited duodenal cancer. The estimate of duodenal cancer risk in patients with FAP is critical for selecting the optimal treatment strategy.

CRISPRpred(SEQ): a sequence-based method for sgRNA on target activity prediction using traditional machine learning.

BMC bioinformatics
BACKGROUND: The latest works on CRISPR genome editing tools mainly employs deep learning techniques. However, deep learning models lack explainability and they are harder to reproduce. We were motivated to build an accurate genome editing tool using ...

Machine learning uncovers cell identity regulator by histone code.

Nature communications
Conversion between cell types, e.g., by induced expression of master transcription factors, holds great promise for cellular therapy. Our ability to manipulate cell identity is constrained by incomplete information on cell identity genes (CIGs) and t...

Bio-semantic relation extraction with attention-based external knowledge reinforcement.

BMC bioinformatics
BACKGROUND: Semantic resources such as knowledge bases contains high-quality-structured knowledge and therefore require significant effort from domain experts. Using the resources to reinforce the information retrieval from the unstructured text may ...

SemanticGO: a tool for gene functional similarity analysis in Arabidopsis thaliana and rice.

Plant science : an international journal of experimental plant biology
Gene or pathway functional similarities are important information for researchers. However, these similarities are often described sparsely and qualitatively. The latent semantic analysis of Arabidopsis thaliana (Arabidopsis) Gene Ontology (GO) data ...

A novel graph attention adversarial network for predicting disease-related associations.

Methods (San Diego, Calif.)
Identifying complex human diseases at molecular level is very helpful, especially in diseases diagnosis, therapy, prognosis and monitoring. Accumulating evidences demonstrated that RNAs are playing important roles in identifying various complex human...

Chinese Emergency Event Recognition Using Conv-RDBiGRU Model.

Computational intelligence and neuroscience
In view of the weak generalization of traditional event recognition methods, the limitation of dependence on field knowledge of expert, the longer train time of deep neural network, and the problem of gradient dispersion, the neural network joint mod...