AIMC Topic: Datasets as Topic

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UbiSite: incorporating two-layered machine learning method with substrate motifs to predict ubiquitin-conjugation site on lysines.

BMC systems biology
BACKGROUND: The conjugation of ubiquitin to a substrate protein (protein ubiquitylation), which involves a sequential process--E1 activation, E2 conjugation and E3 ligation, is crucial to the regulation of protein function and activity in eukaryotes....

Decoding intracranial EEG data with multiple kernel learning method.

Journal of neuroscience methods
BACKGROUND: Machine learning models have been successfully applied to neuroimaging data to make predictions about behavioral and cognitive states of interest. While these multivariate methods have greatly advanced the field of neuroimaging, their app...

Machine learning to assist risk-of-bias assessments in systematic reviews.

International journal of epidemiology
BACKGROUND: Risk-of-bias assessments are now a standard component of systematic reviews. At present, reviewers need to manually identify relevant parts of research articles for a set of methodological elements that affect the risk of bias, in order t...

Cough event classification by pretrained deep neural network.

BMC medical informatics and decision making
BACKGROUND: Cough is an essential symptom in respiratory diseases. In the measurement of cough severity, an accurate and objective cough monitor is expected by respiratory disease society. This paper aims to introduce a better performed algorithm, pr...

Extremely Randomized Machine Learning Methods for Compound Activity Prediction.

Molecules (Basel, Switzerland)
Speed, a relatively low requirement for computational resources and high effectiveness of the evaluation of the bioactivity of compounds have caused a rapid growth of interest in the application of machine learning methods to virtual screening tasks....

A Study of Concept Extraction Across Different Types of Clinical Notes.

AMIA ... Annual Symposium proceedings. AMIA Symposium
Our research investigates methods for creating effective concept extractors for specialty clinical notes. First, we present three new "specialty area" datasets consisting of Cardiology, Neurology, and Orthopedics clinical notes manually annotated wit...

An Ensemble Method for Spelling Correction in Consumer Health Questions.

AMIA ... Annual Symposium proceedings. AMIA Symposium
Orthographic and grammatical errors are a common feature of informal texts written by lay people. Health-related questions asked by consumers are a case in point. Automatic interpretation of consumer health questions is hampered by such errors. In th...

DisPredict: A Predictor of Disordered Protein Using Optimized RBF Kernel.

PloS one
Intrinsically disordered proteins or, regions perform important biological functions through their dynamic conformations during binding. Thus accurate identification of these disordered regions have significant implications in proper annotation of fu...

Fuzzy approximate entropy analysis of resting state fMRI signal complexity across the adult life span.

Medical engineering & physics
In this study, we present a method for measuring functional magnetic resonance imaging (fMRI) signal complexity using fuzzy approximate entropy (fApEn) and compare it with the established sample entropy (SampEn). Here we use resting state fMRI datase...