AIMC Topic: Deep Learning

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A novel semi-supervised learning model based on pelvic radiographs for ankylosing spondylitis diagnosis reduces 90% of annotation cost.

Computers in biology and medicine
OBJECTIVE: Our study aims to develop a deep learning-based Ankylosing Spondylitis (AS) diagnostic model that achieves human expert-level performance using only a minimal amount of labeled samples for training, in regions with limited access to expert...

Deep-GB: A novel deep learning model for globular protein prediction using CNN-BiLSTM architecture and enhanced PSSM with trisection strategy.

IET systems biology
Globular proteins (GPs) play vital roles in a wide range of biological processes, encompassing enzymatic catalysis and immune responses. Enzymes, among these globular proteins, facilitate biochemical reactions, while others, such as haemoglobin, cont...

DeSide: A unified deep learning approach for cellular deconvolution of tumor microenvironment.

Proceedings of the National Academy of Sciences of the United States of America
Cellular deconvolution via bulk RNA sequencing (RNA-seq) presents a cost-effective and efficient alternative to experimental methods such as flow cytometry and single-cell RNA-seq (scRNA-seq) for analyzing the complex cellular composition of tumor mi...

An explainable deep learning model to predict partial anomalous pulmonary venous connection for patients with atrial septal defect.

BMC pediatrics
BACKGROUND: Patients with partial anomalous pulmonary venous connection (PAPVC) usually present asymptomatic and accompanied by intricate anatomical types, which results in missed diagnosis from atrial septal defect (ASD). The present study aimed to ...

Deep learning method for detecting fluorescence spots in cancer diagnostics via fluorescence in situ hybridization.

Scientific reports
Fluorescence in Situ Hybridization (FISH) is a technique for macromolecule identification that utilizes the complementarity of DNA or DNA/RNA double strands. Probes, crafted from selected DNA strands tagged with fluorophore-coupled nucleotides, hybri...

Deep learning for 3D vascular segmentation in hierarchical phase contrast tomography: a case study on kidney.

Scientific reports
Automated blood vessel segmentation is critical for biomedical image analysis, as vessel morphology changes are associated with numerous pathologies. Still, precise segmentation is difficult due to the complexity of vascular structures, anatomical va...

A deep learning approach for rational ligand generation with toxicity control via reactive building blocks.

Nature computational science
Deep generative models are gaining attention in the field of de novo drug design. However, the rational design of ligand molecules for novel targets remains challenging, particularly in controlling the properties of the generated molecules. Here, ins...

A deep learning model for prediction of autism status using whole-exome sequencing data.

PLoS computational biology
Autism is a developmental disability. Research demonstrated that children with autism benefit from early diagnosis and early intervention. Genetic factors are considered major contributors to the development of autism. Machine learning (ML), includin...

Segmentation and classification of brain tumor using Taylor fire hawk optimization enabled deep learning approach.

Electromagnetic biology and medicine
The brain is a crucial organ that controls the body's neural system. The tumor develops and spreads across the brain as a result of irregular cell generation. The provision of substantial treatment to patients requires the early diagnosis of malignan...