AIMC Topic: Electronic Health Records

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On using electronic health records to improve optimal treatment rules in randomized trials.

Biometrics
Individualized treatment rules (ITRs) tailor medical treatments according to patient-specific characteristics in order to optimize patient outcomes. Data from randomized controlled trials (RCTs) are used to infer valid ITRs using statistical and mach...

Cohort selection for clinical trials using multiple instance learning.

Journal of biomedical informatics
Identifying patients eligible for clinical trials using electronic health records (EHRs) is a challenging task usually requiring a comprehensive analysis of information stored in multiple EHRs of a patient. The goal of this study is to investigate di...

Deep learning with sentence embeddings pre-trained on biomedical corpora improves the performance of finding similar sentences in electronic medical records.

BMC medical informatics and decision making
BACKGROUND: Capturing sentence semantics plays a vital role in a range of text mining applications. Despite continuous efforts on the development of related datasets and models in the general domain, both datasets and models are limited in biomedical...

Publicly available machine learning models for identifying opioid misuse from the clinical notes of hospitalized patients.

BMC medical informatics and decision making
BACKGROUND: Automated de-identification methods for removing protected health information (PHI) from the source notes of the electronic health record (EHR) rely on building systems to recognize mentions of PHI in text, but they remain inadequate at e...

Chinese clinical named entity recognition with variant neural structures based on BERT methods.

Journal of biomedical informatics
Clinical Named Entity Recognition (CNER) is a critical task which aims to identify and classify clinical terms in electronic medical records. In recent years, deep neural networks have achieved significant success in CNER. However, these methods requ...

Harmonized representation learning on dynamic EHR graphs.

Journal of biomedical informatics
With the rise of deep learning, several recent studies on deep learning-based methods for electronic health records (EHR) successfully address real-world clinical challenges by utilizing effective representations of medical entities. However, existin...

BioConceptVec: Creating and evaluating literature-based biomedical concept embeddings on a large scale.

PLoS computational biology
A massive number of biological entities, such as genes and mutations, are mentioned in the biomedical literature. The capturing of the semantic relatedness of biological entities is vital to many biological applications, such as protein-protein inter...

Machine Learning Algorithms in Suicide Prevention: Clinician Interpretations as Barriers to Implementation.

The Journal of clinical psychiatry
OBJECTIVE: Machine learning algorithms in electronic medical records can classify patients by suicide risk, but no research has explored clinicians' perceptions of suicide risk flags generated by these algorithms, which may affect algorithm implement...