AIMC Topic: Electronic Health Records

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Comparison of orthogonal NLP methods for clinical phenotyping and assessment of bone scan utilization among prostate cancer patients.

Journal of biomedical informatics
OBJECTIVE: Clinical care guidelines recommend that newly diagnosed prostate cancer patients at high risk for metastatic spread receive a bone scan prior to treatment and that low risk patients not receive it. The objective was to develop an automated...

PGxO and PGxLOD: a reconciliation of pharmacogenomic knowledge of various provenances, enabling further comparison.

BMC bioinformatics
BACKGROUND: Pharmacogenomics (PGx) studies how genomic variations impact variations in drug response phenotypes. Knowledge in pharmacogenomics is typically composed of units that have the form of ternary relationships gene variant - drug - adverse ev...

Neural transfer learning for assigning diagnosis codes to EMRs.

Artificial intelligence in medicine
OBJECTIVE: Electronic medical records (EMRs) are manually annotated by healthcare professionals and specialized medical coders with a standardized set of alphanumeric diagnosis and procedure codes, specifically from the International Classification o...

A deep learning model incorporating part of speech and self-matching attention for named entity recognition of Chinese electronic medical records.

BMC medical informatics and decision making
BACKGROUND: The Named Entity Recognition (NER) task as a key step in the extraction of health information, has encountered many challenges in Chinese Electronic Medical Records (EMRs). Firstly, the casual use of Chinese abbreviations and doctors' per...

A fine-grained Chinese word segmentation and part-of-speech tagging corpus for clinical text.

BMC medical informatics and decision making
BACKGROUND: Chinese word segmentation (CWS) and part-of-speech (POS) tagging are two fundamental tasks of Chinese text processing. They are usually preliminary steps for lots of Chinese natural language processing (NLP) tasks. There have been a large...

A hybrid approach for named entity recognition in Chinese electronic medical record.

BMC medical informatics and decision making
BACKGROUND: With the rapid spread of electronic medical records and the arrival of medical big data era, the application of natural language processing technology in biomedicine has become a hot research topic.

Evidential MACE prediction of acute coronary syndrome using electronic health records.

BMC medical informatics and decision making
BACKGROUND: Major adverse cardiac event (MACE) prediction plays a key role in providing efficient and effective treatment strategies for patients with acute coronary syndrome (ACS) during their hospitalizations. Existing prediction models have limita...

On building a diabetes centric knowledge base via mining the web.

BMC medical informatics and decision making
BACKGROUND: Diabetes has become one of the hot topics in life science researches. To support the analytical procedures, researchers and analysts expend a mass of labor cost to collect experimental data, which is also error-prone. To reduce the cost a...

Attention-based deep residual learning network for entity relation extraction in Chinese EMRs.

BMC medical informatics and decision making
BACKGROUND: Electronic medical records (EMRs) contain a variety of valuable medical concepts and relations. The ability to recognize relations between medical concepts described in EMRs enables the automatic processing of clinical texts, resulting in...

Time-sensitive clinical concept embeddings learned from large electronic health records.

BMC medical informatics and decision making
BACKGROUND: Learning distributional representation of clinical concepts (e.g., diseases, drugs, and labs) is an important research area of deep learning in the medical domain. However, many existing relevant methods do not consider temporal dependenc...