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High-Throughput Screening Assays

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A fully automated deep learning pipeline for high-throughput colony segmentation and classification.

Biology open
Adenine auxotrophy is a commonly used non-selective genetic marker in yeast research. It allows investigators to easily visualize and quantify various genetic and epigenetic events by simply reading out colony color. However, manual counting of large...

High-Throughput and Autonomous Grazing Incidence X-ray Diffraction Mapping of Organic Combinatorial Thin-Film Library Driven by Machine Learning.

ACS combinatorial science
High-throughput X-ray diffraction (XRD) is one of the most indispensable techniques to accelerate materials research. However, the conventional XRD analysis with a large beam spot size may not best appropriate in a case for characterizing organic mat...

Machine learning-assisted enzyme engineering.

Methods in enzymology
Directed evolution and rational design are powerful strategies in protein engineering to tailor enzyme properties to meet the demands in academia and industry. Traditional approaches for enzyme engineering and directed evolution are often experimenta...

Robot technology identifies a Parkinsonian therapeutics repurpose to target stem cells of glioblastoma.

CNS oncology
Glioblastoma is a heterogeneous lethal disease, regulated by a stem-cell hierarchy and the neurotransmitter microenvironment. The identification of chemotherapies targeting individual cancer stem cells is a clinical need. A robotic workstation was ...

Combining Supervised and Unsupervised Machine Learning Methods for Phenotypic Functional Genomics Screening.

SLAS discovery : advancing life sciences R & D
There has been an increase in the use of machine learning and artificial intelligence (AI) for the analysis of image-based cellular screens. The accuracy of these analyses, however, is greatly dependent on the quality of the training sets used for bu...

GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions.

BMC bioinformatics
BACKGROUND: Functional enrichment of genes and pathways based on Gene Ontology (GO) has been widely used to describe the results of various -omics analyses. GO terms statistically overrepresented within a set of a large number of genes are typically ...

Top-down machine learning approach for high-throughput single-molecule analysis.

eLife
Single-molecule approaches provide enormous insight into the dynamics of biomolecules, but adequately sampling distributions of states and events often requires extensive sampling. Although emerging experimental techniques can generate such large dat...

Uncertainty-Quantified Hybrid Machine Learning/Density Functional Theory High Throughput Screening Method for Crystals.

Journal of chemical information and modeling
Computational high throughput screening (HTS) has emerged as a significant tool in material science to accelerate the discovery of new materials with target properties in recent years. However, despite many successful cases in which HTS led to the no...

High-Throughput Screening Technology in Industrial Biotechnology.

Trends in biotechnology
Based on the development of automatic devices and rapid assay methods, various high-throughput screening (HTS) strategies have been established for improving the performance of industrial microorganisms. We discuss the most significant factors that c...