AIMC Topic: Machine Learning

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Machine learning assessment of dental age classification based on cone-beam CT images: a different approach.

Dento maxillo facial radiology
OBJECTIVES: Machine learning (ML) algorithms are a portion of artificial intelligence that may be used to create more accurate algorithmic procedures for estimating an individual's dental age or defining an age classification. This study aims to use ...

Multiple sequence alignment-based RNA language model and its application to structural inference.

Nucleic acids research
Compared with proteins, DNA and RNA are more difficult languages to interpret because four-letter coded DNA/RNA sequences have less information content than 20-letter coded protein sequences. While BERT (Bidirectional Encoder Representations from Tra...

CADD v1.7: using protein language models, regulatory CNNs and other nucleotide-level scores to improve genome-wide variant predictions.

Nucleic acids research
Machine Learning-based scoring and classification of genetic variants aids the assessment of clinical findings and is employed to prioritize variants in diverse genetic studies and analyses. Combined Annotation-Dependent Depletion (CADD) is one of th...

Approaches for predicting dairy cattle methane emissions: from traditional methods to machine learning.

Journal of animal science
Measuring dairy cattle methane (CH4) emissions using traditional recording technologies is complicated and expensive. Prediction models, which estimate CH4 emissions based on proxy information, provide an accessible alternative. This review covers th...

Modeling energy partition patterns of growing pigs fed diets with different net energy levels based on machine learning.

Journal of animal science
The objectives of this study were to evaluate the energy partition patterns of growing pigs fed diets with different net energy (NE) levels based on machine learning methods, and to develop prediction models for the NE requirement of growing pigs. Tw...

Integration of transcriptome and machine learning to identify the potential key genes and regulatory networks affecting drip loss in pork.

Journal of animal science
Low level of drip loss (DL) is an important quality characteristic of meat with high economic value. However, the key genes and regulatory networks contributing to DL in pork remain largely unknown. To accurately identify the key genes affecting DL i...

Discovering genotype-phenotype relationships with machine learning and the Visual Physiology Opsin Database (VPOD).

GigaScience
BACKGROUND: Predicting phenotypes from genetic variation is foundational for fields as diverse as bioengineering and global change biology, highlighting the importance of efficient methods to predict gene functions. Linking genetic changes to phenoty...

CoCoPyE: feature engineering for learning and prediction of genome quality indices.

GigaScience
BACKGROUND: The exploration of the microbial world has been greatly advanced by the reconstruction of genomes from metagenomic sequence data. However, the rapidly increasing number of metagenome-assembled genomes has also resulted in a wide variation...

RNAVirHost: a machine learning-based method for predicting hosts of RNA viruses through viral genomes.

GigaScience
BACKGROUND: The high-throughput sequencing technologies have revolutionized the identification of novel RNA viruses. Given that viruses are infectious agents, identifying hosts of these new viruses carries significant implications for public health a...

CheRRI-Accurate classification of the biological relevance of putative RNA-RNA interaction sites.

GigaScience
BACKGROUND: RNA-RNA interactions are key to a wide range of cellular functions. The detection of potential interactions helps to understand the underlying processes. However, potential interactions identified via in silico or experimental high-throug...