AIMC Topic: Mice

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SLEAP: A deep learning system for multi-animal pose tracking.

Nature methods
The desire to understand how the brain generates and patterns behavior has driven rapid methodological innovation in tools to quantify natural animal behavior. While advances in deep learning and computer vision have enabled markerless pose estimatio...

Protection against ulcerative colitis and colorectal cancer by evodiamine via anti‑inflammatory effects.

Molecular medicine reports
Evodiamine (Evo) is an alkaloid that can be extracted from the berry fruit and has been reported to exert various pharmacological effects, such as antidiarrheal, antiemetic and antiulcer effects. , the potential effects of Evo were investigated in a...

Deep learning approach identified a gene signature predictive of the severity of renal damage caused by chronic cadmium accumulation.

Journal of hazardous materials
Epidemiology studies have indicated that environmental cadmium exposure, even at low levels, will result in chronic cadmium accumulation in the kidney with profound adverse consequences and that the diabetic population is more susceptible. However, t...

A morphometric analysis of the osteocyte canaliculus using applied automatic semantic segmentation by machine learning.

Journal of bone and mineral metabolism
INTRODUCTION: Osteocytes play a role as mechanosensory cells by sensing flow-induced mechanical stimuli applied on their cell processes. High-resolution imaging of osteocyte processes and the canalicular wall are necessary for the analysis of this me...

Glycotherapy: A New Paradigm in Breast Cancer Research.

Biomolecules
Breast cancer is an ancient disease recognized first by the Egyptians as early as 1600 BC. The first cancer-causing gene in a chicken tumor virus was found in 1970. The United States signed the National Cancer Act in 1971, authorizing federal funding...

A deep-learning approach for online cell identification and trace extraction in functional two-photon calcium imaging.

Nature communications
In vivo two-photon calcium imaging is a powerful approach in neuroscience. However, processing two-photon calcium imaging data is computationally intensive and time-consuming, making online frame-by-frame analysis challenging. This is especially true...

Deep-learning two-photon fiberscopy for video-rate brain imaging in freely-behaving mice.

Nature communications
Scanning two-photon (2P) fiberscopes (also termed endomicroscopes) have the potential to transform our understanding of how discrete neural activity patterns result in distinct behaviors, as they are capable of high resolution, sub cellular imaging y...

Cell segmentation for immunofluorescence multiplexed images using two-stage domain adaptation and weakly labeled data for pre-training.

Scientific reports
Cellular profiling with multiplexed immunofluorescence (MxIF) images can contribute to a more accurate patient stratification for immunotherapy. Accurate cell segmentation of the MxIF images is an essential step. We propose a deep learning pipeline t...

Deep learning tools and modeling to estimate the temporal expression of cell cycle proteins from 2D still images.

PLoS computational biology
Automatic characterization of fluorescent labeling in intact mammalian tissues remains a challenge due to the lack of quantifying techniques capable of segregating densely packed nuclei and intricate tissue patterns. Here, we describe a powerful deep...

Automatic wound detection and size estimation using deep learning algorithms.

PLoS computational biology
Evaluating and tracking wound size is a fundamental metric for the wound assessment process. Good location and size estimates can enable proper diagnosis and effective treatment. Traditionally, laboratory wound healing studies include a collection of...