AIMC Topic: Natural Language Processing

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A categorical analysis of coreference resolution errors in biomedical texts.

Journal of biomedical informatics
BACKGROUND: Coreference resolution is an essential task in information extraction from the published biomedical literature. It supports the discovery of complex information by linking referring expressions such as pronouns and appositives to their re...

Speculation detection for Chinese clinical notes: Impacts of word segmentation and embedding models.

Journal of biomedical informatics
Speculations represent uncertainty toward certain facts. In clinical texts, identifying speculations is a critical step of natural language processing (NLP). While it is a nontrivial task in many languages, detecting speculations in Chinese clinical ...

Natural Language Processing for Cohort Discovery in a Discharge Prediction Model for the Neonatal ICU.

Applied clinical informatics
OBJECTIVES: Discharging patients from the Neonatal Intensive Care Unit (NICU) can be delayed for non-medical reasons including the procurement of home medical equipment, parental education, and the need for children's services. We previously created ...

Temporal data representation, normalization, extraction, and reasoning: A review from clinical domain.

Computer methods and programs in biomedicine
BACKGROUND AND OBJECTIVE: We live our lives by the calendar and the clock, but time is also an abstraction, even an illusion. The sense of time can be both domain-specific and complex, and is often left implicit, requiring significant domain knowledg...

A method for modeling co-occurrence propensity of clinical codes with application to ICD-10-PCS auto-coding.

Journal of the American Medical Informatics Association : JAMIA
OBJECTIVE: Natural language processing methods for medical auto-coding, or automatic generation of medical billing codes from electronic health records, generally assign each code independently of the others. They may thus assign codes for closely re...

Adapting content-based image retrieval techniques for the semantic annotation of medical images.

Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society
The automatic annotation of medical images is a prerequisite for building comprehensive semantic archives that can be used to enhance evidence-based diagnosis, physician education, and biomedical research. Annotation also has important applications i...

Drug-Drug Interaction Extraction via Convolutional Neural Networks.

Computational and mathematical methods in medicine
Drug-drug interaction (DDI) extraction as a typical relation extraction task in natural language processing (NLP) has always attracted great attention. Most state-of-the-art DDI extraction systems are based on support vector machines (SVM) with a lar...

A Comparison of Natural Language Processing Methods for Automated Coding of Motivational Interviewing.

Journal of substance abuse treatment
Motivational interviewing (MI) is an efficacious treatment for substance use disorders and other problem behaviors. Studies on MI fidelity and mechanisms of change typically use human raters to code therapy sessions, which requires considerable time,...

ChemTok: A New Rule Based Tokenizer for Chemical Named Entity Recognition.

BioMed research international
Named Entity Recognition (NER) from text constitutes the first step in many text mining applications. The most important preliminary step for NER systems using machine learning approaches is tokenization where raw text is segmented into tokens. This ...