AIMC Topic: Plants

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Design of Knowledge Bases for Plant Gene Regulatory Networks.

Methods in molecular biology (Clifton, N.J.)
Developing a knowledge base that contains all the information necessary for the researcher studying gene regulation in a particular organism can be accomplished in four stages. This begins with defining the data scope. We describe here the necessary ...

Novel applications of multitask learning and multiple output regression to multiple genetic trait prediction.

Bioinformatics (Oxford, England)
UNLABELLED: Given a set of biallelic molecular markers, such as SNPs, with genotype values encoded numerically on a collection of plant, animal or human samples, the goal of genetic trait prediction is to predict the quantitative trait values by simu...

The Plant Ontology: A Tool for Plant Genomics.

Methods in molecular biology (Clifton, N.J.)
The use of controlled, structured vocabularies (ontologies) has become a critical tool for scientists in the post-genomic era of massive datasets. Adoption and integration of common vocabularies and annotation practices enables cross-species comparat...

Hierarchical Learning of Tree Classifiers for Large-Scale Plant Species Identification.

IEEE transactions on image processing : a publication of the IEEE Signal Processing Society
In this paper, a hierarchical multi-task structural learning algorithm is developed to support large-scale plant species identification, where a visual tree is constructed for organizing large numbers of plant species in a coarse-to-fine fashion and ...

Automatic extraction of reference gene from literature in plants based on texting mining.

International journal of data mining and bioinformatics
Real-Time Quantitative Polymerase Chain Reaction (qRT-PCR) is widely used in biological research. It is a key to the availability of qRT-PCR experiment to select a stable reference gene. However, selecting an appropriate reference gene usually requir...