AIMC Topic: Semantics

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CNN-based ranking for biomedical entity normalization.

BMC bioinformatics
BACKGROUND: Most state-of-the-art biomedical entity normalization systems, such as rule-based systems, merely rely on morphological information of entity mentions, but rarely consider their semantic information. In this paper, we introduce a novel co...

Semantic annotation in biomedicine: the current landscape.

Journal of biomedical semantics
The abundance and unstructured nature of biomedical texts, be it clinical or research content, impose significant challenges for the effective and efficient use of information and knowledge stored in such texts. Annotation of biomedical documents wit...

Large-scale online semantic indexing of biomedical articles via an ensemble of multi-label classification models.

Journal of biomedical semantics
BACKGROUND: In this paper we present the approach that we employed to deal with large scale multi-label semantic indexing of biomedical papers. This work was mainly implemented within the context of the BioASQ challenge (2013-2017), a challenge conce...

Investigations on factors influencing HPO-based semantic similarity calculation.

Journal of biomedical semantics
BACKGROUND: Although disease diagnosis has greatly benefited from next generation sequencing technologies, it is still difficult to make the right diagnosis purely based on sequencing technologies for many diseases with complex phenotypes and high ge...

Relationship between neuronal network architecture and naming performance in temporal lobe epilepsy: A connectome based approach using machine learning.

Brain and language
Impaired confrontation naming is a common symptom of temporal lobe epilepsy (TLE). The neurobiological mechanisms underlying this impairment are poorly understood but may indicate a structural disorganization of broadly distributed neuronal networks ...

Semantic Modeling for Exposomics with Exploratory Evaluation in Clinical Context.

Journal of healthcare engineering
Exposome is a critical dimension in the precision medicine paradigm. Effective representation of exposomics knowledge is instrumental to melding nongenetic factors into data analytics for clinical research. There is still limited work in (1) modeling...

A brain-based account of "basic-level" concepts.

NeuroImage
This study provides a brain-based account of how object concepts at an intermediate (basic) level of specificity are represented, offering an enriched view of what it means for a concept to be a basic-level concept, a research topic pioneered by Rosc...

Decoding naturalistic experiences from human brain activity via distributed representations of words.

NeuroImage
Natural visual scenes induce rich perceptual experiences that are highly diverse from scene to scene and from person to person. Here, we propose a new framework for decoding such experiences using a distributed representation of words. We used functi...

DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species.

Scientific reports
Tomato is the most economically important horticultural crop used as a model to study plant biology and particularly fruit development. Knowledge obtained from tomato research initiated improvements in tomato and, being transferrable to other such ec...

Leveraging syntax to better capture the semantics of elliptical coordinated compound noun phrases.

Journal of biomedical informatics
Full-text scientific articles are increasingly available, but capturing the meaning conveyed within an article automatically remains a bottleneck for semantic search and reasoning systems. In this paper we consider elliptical coordinated compound nou...