AIMC Topic: Software

Clear Filters Showing 3531 to 3540 of 3675 articles

Toolkits and Libraries for Deep Learning.

Journal of digital imaging
Deep learning is an important new area of machine learning which encompasses a wide range of neural network architectures designed to complete various tasks. In the medical imaging domain, example tasks include organ segmentation, lesion detection, a...

Fully Automated Deep Learning System for Bone Age Assessment.

Journal of digital imaging
Skeletal maturity progresses through discrete phases, a fact that is used routinely in pediatrics where bone age assessments (BAAs) are compared to chronological age in the evaluation of endocrine and metabolic disorders. While central to many diseas...

iMulti-HumPhos: a multi-label classifier for identifying human phosphorylated proteins using multiple kernel learning based support vector machines.

Molecular bioSystems
Protein phosphorylation plays a potential role in regulating protein conformation and functions. As a result, identifying an uncharacterized protein sequence as a phosphorylated protein is a very meaningful problem and an urgent issue for both basic ...

When loss-of-function is loss of function: assessing mutational signatures and impact of loss-of-function genetic variants.

Bioinformatics (Oxford, England)
MOTIVATION: Loss-of-function genetic variants are frequently associated with severe clinical phenotypes, yet many are present in the genomes of healthy individuals. The available methods to assess the impact of these variants rely primarily upon evol...

TITER: predicting translation initiation sites by deep learning.

Bioinformatics (Oxford, England)
MOTIVATION: Translation initiation is a key step in the regulation of gene expression. In addition to the annotated translation initiation sites (TISs), the translation process may also start at multiple alternative TISs (including both AUG and non-A...

Denoising genome-wide histone ChIP-seq with convolutional neural networks.

Bioinformatics (Oxford, England)
MOTIVATION: Chromatin immune-precipitation sequencing (ChIP-seq) experiments are commonly used to obtain genome-wide profiles of histone modifications associated with different types of functional genomic elements. However, the quality of histone ChI...

Chromatin accessibility prediction via convolutional long short-term memory networks with k-mer embedding.

Bioinformatics (Oxford, England)
MOTIVATION: Experimental techniques for measuring chromatin accessibility are expensive and time consuming, appealing for the development of computational approaches to predict open chromatin regions from DNA sequences. Along this direction, existing...

DextMP: deep dive into text for predicting moonlighting proteins.

Bioinformatics (Oxford, England)
MOTIVATION: Moonlighting proteins (MPs) are an important class of proteins that perform more than one independent cellular function. MPs are gaining more attention in recent years as they are found to play important roles in various systems including...

Deep learning with word embeddings improves biomedical named entity recognition.

Bioinformatics (Oxford, England)
MOTIVATION: Text mining has become an important tool for biomedical research. The most fundamental text-mining task is the recognition of biomedical named entities (NER), such as genes, chemicals and diseases. Current NER methods rely on pre-defined ...

agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update.

Nucleic acids research
The agriGO platform, which has been serving the scientific community for >10 years, specifically focuses on gene ontology (GO) enrichment analyses of plant and agricultural species. We continuously maintain and update the databases and accommodate th...