AIMC Topic: Staining and Labeling

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Comparison of deep learning models for digital H&E staining from unpaired label-free multispectral microscopy images.

Computer methods and programs in biomedicine
BACKGROUND AND OBJECTIVE: This paper presents the quantitative comparison of three generative models of digital staining, also known as virtual staining, in H&E modality (i.e., Hematoxylin and Eosin) that are applied to 5 types of breast tissue. More...

Phase Contrast Image Restoration by Formulating Its Imaging Principle and Reversing the Formulation With Deep Neural Networks.

IEEE transactions on medical imaging
Phase contrast microscopy, as a noninvasive imaging technique, has been widely used to monitor the behavior of transparent cells without staining or altering them. Due to the optical principle of the specifically-designed microscope, phase contrast m...

Classification of HEp-2 Staining Pattern Images Using Adapted Multilayer Perceptron Neural Network-Based Intra-Class Variation of Cell Shape.

Sensors (Basel, Switzerland)
There exists a growing interest from the clinical practice research communities in the development of methods to automate HEp-2 stained cells classification procedure from histopathological images. Challenges faced by these methods include variations...

Deep learning-based image analysis predicts PD-L1 status from H&E-stained histopathology images in breast cancer.

Nature communications
Programmed death ligand-1 (PD-L1) has been recently adopted for breast cancer as a predictive biomarker for immunotherapies. The cost, time, and variability of PD-L1 quantification by immunohistochemistry (IHC) are a challenge. In contrast, hematoxyl...

Deep learning-assisted co-registration of full-spectral autofluorescence lifetime microscopic images with H&E-stained histology images.

Communications biology
Autofluorescence lifetime images reveal unique characteristics of endogenous fluorescence in biological samples. Comprehensive understanding and clinical diagnosis rely on co-registration with the gold standard, histology images, which is extremely c...

Boundary-aware glomerulus segmentation: Toward one-to-many stain generalization.

Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society
The growing availability of scanned whole-slide images (WSIs) has allowed nephropathology to open new possibilities for medical decision-making over high-resolution images. Diagnosis of renal WSIs includes locating and identifying specific structures...

Transformer-based unsupervised contrastive learning for histopathological image classification.

Medical image analysis
A large-scale and well-annotated dataset is a key factor for the success of deep learning in medical image analysis. However, assembling such large annotations is very challenging, especially for histopathological images with unique characteristics (...

CS-CO: A Hybrid Self-Supervised Visual Representation Learning Method for H&E-stained Histopathological Images.

Medical image analysis
Visual representation extraction is a fundamental problem in the field of computational histopathology. Considering the powerful representation capacity of deep learning and the scarcity of annotations, self-supervised learning has emerged as a promi...

MVFStain: Multiple virtual functional stain histopathology images generation based on specific domain mapping.

Medical image analysis
To the best of our knowledge, artificial intelligence stain generation is an urgent requirement for histopathology images. Pathological examinations usually only utilize hematoxylin and eosin (H&E) regular staining to show histomorphological characte...