AIMC Topic: Supervised Machine Learning

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Ensemble methods and partially-supervised learning for accurate and robust automatic murine organ segmentation.

Scientific reports
Delineation of multiple organs in murine µCT images is crucial for preclinical studies but requires manual volumetric segmentation, a tedious and time-consuming process prone to inter-observer variability. Automatic deep learning-based segmentation c...

MS-EmoBoost: a novel strategy for enhancing self-supervised speech emotion representations.

Scientific reports
Extracting richer emotional representations from raw speech is one of the key approaches to improving the accuracy of Speech Emotion Recognition (SER). In recent years, there has been a trend in utilizing self-supervised learning (SSL) for extracting...

Generative AI for weakly supervised segmentation and downstream classification of brain tumors on MR images.

Scientific reports
Segmenting abnormalities is a leading problem in medical imaging. Using machine learning for segmentation generally requires manually annotated segmentations, demanding extensive time and resources from radiologists. We propose a weakly supervised ap...

A supervised machine learning approach with feature selection for sex-specific biomarker prediction.

NPJ systems biology and applications
Biomarkers are crucial in aiding in disease diagnosis, prognosis, and treatment selection. Machine learning (ML) has emerged as an effective tool for identifying novel biomarkers and enhancing predictive modelling. However, sex-based bias in ML algor...

Spatial domain detection using contrastive self-supervised learning for spatial multi-omics technologies.

Genome research
Recent advances in spatially resolved single-omic and multi-omics technologies have led to the emergence of computational tools to detect and predict spatial domains. Additionally, histological images and immunofluorescence (IF) staining of proteins ...

Developing a predictive model for anticipating technology convergence: A transformer-based model and supervised learning approach.

PloS one
This study proposes a novel approach to anticipating technology convergence in the bio-healthcare sector by integrating text mining based on transformer models and supervised learning methodologies. The overarching goal is to develop a robust method ...

CellSeg3D, Self-supervised 3D cell segmentation for fluorescence microscopy.

eLife
Understanding the complex three-dimensional structure of cells is crucial across many disciplines in biology and especially in neuroscience. Here, we introduce a set of models including a 3D transformer (SwinUNetR) and a novel 3D self-supervised lear...

Quasi-supervised MR-CT image conversion based on unpaired data.

Physics in medicine and biology
. In radiotherapy planning, acquiring both magnetic resonance (MR) and computed tomography (CT) images is crucial for comprehensive evaluation and treatment. However, simultaneous acquisition of MR and CT images is time-consuming, economically expens...

Assessing simulation-based supervised machine learning for demographic parameter inference from genomic data.

Heredity
The ever-increasing availability of high-throughput DNA sequences and the development of numerous computational methods have led to considerable advances in our understanding of the evolutionary and demographic history of populations. Several demogra...

A method for spatial interpretation of weakly supervised deep learning models in computational pathology.

Scientific reports
Deep learning enables the modelling of high-resolution histopathology whole-slide images (WSI). Weakly supervised learning of tile-level data is typically applied for tasks where labels only exist on the patient or WSI level (e.g. patient outcomes or...