AIMC Topic: Transcription Initiation Site

Clear Filters Showing 11 to 13 of 13 articles

TSSPlant: a new tool for prediction of plant Pol II promoters.

Nucleic acids research May 5, 2017
Our current knowledge of eukaryotic promoters indicates their complex architecture that is often composed of numerous functional motifs. Most of known promoters include multiple and in some cases mutually exclusive transcription start sites (TSSs). M...
Neural Networks, Computer Software Sequence Analysis, DNA Gene Expression Oryza Plant Proteins Promoter Regions, Genetic RNA Polymerase II Genome, Plant Arabidopsis Transcription Initiation Site
View on PubMed DOI

Design of Knowledge Bases for Plant Gene Regulatory Networks.

Methods in molecular biology (Clifton, N.J.) Jan 1, 2017
Developing a knowledge base that contains all the information necessary for the researcher studying gene regulation in a particular organism can be accomplished in four stages. This begins with defining the data scope. We describe here the necessary ...
Software User-Computer Interface Gene Regulatory Networks Protein Binding Computational Biology Transcription Factors Databases, Genetic Plants Knowledge Bases Binding Sites Gene Expression Regulation, Plant Search Engine Database Management Systems Chromosome Mapping Web Browser Transcription Initiation Site
View on PubMed DOI

LncRNA ontology: inferring lncRNA functions based on chromatin states and expression patterns.

Oncotarget Nov 24, 2015
Accumulating evidences suggest that long non-coding RNAs (lncRNAs) perform important functions. Genome-wide chromatin-states area rich source of information about cellular state, yielding insights beyond what is typically obtained by transcriptome pr...
Humans Algorithms Cells, Cultured Neoplasms Gene Expression Profiling Cell Line, Tumor Gene Regulatory Networks RNA, Messenger Models, Genetic Hep G2 Cells Cell Line RNA, Long Noncoding HeLa Cells Methylation Promoter Regions, Genetic Lysine K562 Cells Histones Gene Ontology Chromatin Transcription Initiation Site
View on PubMed DOI
Popular Topics
Recent Journals