Pathology

Latest AI and machine learning research in pathology for healthcare professionals.

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DeepProjection: specific and robust projection of curved 2D tissue sheets from 3D microscopy using deep learning.

The efficient extraction of image data from curved tissue sheets embedded in volumetric imaging data remains a serious and unsolved problem in quantitative studies of embryogenesis. Here, we present DeepProjection (DP), a trainable projection algorithm based on deep learning. This algorithm is trained on user-generated training data to locally classify 3D stack content, and to rapidly and robustly...

Nov 11 2022 36178108

Graph deep learning for the characterization of tumour microenvironments from spatial protein profiles in tissue specimens.

Multiplexed immunofluorescence imaging allows the multidimensional molecular profiling of cellular environments at subcellular resolution. However, identifying and characterizing disease-relevant microenvironments from these rich datasets is challenging. Here we show that a graph neural network that leverages spatial protein profiles in tissue specimens to model tumour microenvironments as local s...

Nov 10 2022 36357512
Deep learning-based quantification of NAFLD/NASH progression in human liver biopsies.

Non-alcoholic fatty liver disease (NAFLD) affects about 24% of the world's population. Progression of early stages of NAFLD can lead to the more advan...

Nov 10 2022 36357500
Force-Sensorless Identification and Classification of Tissue Biomechanical Parameters for Robot-Assisted Palpation.

The implementation of robotic systems for minimally invasive surgery and medical procedures is an active topic of research in recent years. One of the...

Nov 10 2022 36433266
Artificial Intelligence You Can Trust: What Matters Beyond Performance When Applying Artificial Intelligence to Renal Histopathology?

Although still in its infancy, artificial intelligence (AI) analysis of kidney biopsy images is anticipated to become an integral aspect of renal hist...

Nov 9 2022 36351761
Deep learning-based framework for slide-based histopathological image analysis.

Digital pathology coupled with advanced machine learning (e.g., deep learning) has been changing the paradigm of whole-slide histopathological images ...

Nov 9 2022 36351997
OrganoID: A versatile deep learning platform for tracking and analysis of single-organoid dynamics.

Organoids have immense potential as ex vivo disease models for drug discovery and personalized drug screening. Dynamic changes in individual organoid ...

Nov 9 2022 36350878
Quantitative Radiological Features and Deep Learning for the Non-Invasive Evaluation of Programmed Death Ligand 1 Expression Levels in Gastric Cancer Patients: A Digital Biopsy Study.

RATIONALE AND OBJECTIVES: Programmed Death-Ligand 1 (PD-L1) is an important biomarker for patient selection of immunotherapy in gastric cancer (GC). T...

Nov 8 2022 36369191
Automated volume measurement of abdominal adipose tissue from entire abdominal cavity in Dixon MR images using deep learning.

The purpose of this study was to realize an automated volume measurement of abdominal adipose tissue from the entire abdominal cavity in Dixon magneti...

Nov 8 2022 36344662
Molecular Networking and On-Tissue Chemical Derivatization for Enhanced Identification and Visualization of Steroid Glycosides by MALDI Mass Spectrometry Imaging.

Spatial metabolomics describes the spatially resolved analysis of interconnected pathways, biochemical reactions, and transport processes of small mol...

Nov 8 2022 36347515
Concluding remarks: Challenges and future developments in biological electron cryo-microscopy.

During the past 10 years, biological electron cryo-microscopy (cryoEM) has undergone a process of rapid transformation. Many things we could only drea...

Nov 8 2022 36305740
Deep learning-based image analysis predicts PD-L1 status from H&E-stained histopathology images in breast cancer.

Programmed death ligand-1 (PD-L1) has been recently adopted for breast cancer as a predictive biomarker for immunotherapies. The cost, time, and varia...

Nov 8 2022 36347854
Systematic tissue annotations of genomics samples by modeling unstructured metadata.

There are currently >1.3 million human -omics samples that are publicly available. This valuable resource remains acutely underused because discoverin...

Nov 8 2022 36347858
Deep learning model for breast cancer diagnosis based on bilateral asymmetrical detection (BilAD) in digital breast tomosynthesis images.

The purpose of this study was to develop a deep learning model to diagnose breast cancer by embedding a diagnostic algorithm that examines the asymmet...

Nov 7 2022 36342640
High-content video flow cytometry with digital cell filtering for label-free cell classification by machine learning.

Recent development of imaging flow cytometry (IFC) has enabled the measurements of single cells with high throughput, where fluorescent labels provide...

Nov 4 2022 36287146
Computer-aided detection and prognosis of colorectal cancer on whole slide images using dual resolution deep learning.

PURPOSE: Rapid diagnosis and risk stratification can provide timely treatment for colorectal cancer (CRC) patients. Deep learning (DL) is not only use...

Nov 4 2022 36331654
Transcranial Doppler analysis based on computer and artificial intelligence for acute cerebrovascular disease.

Cerebrovascular disease refers to damage to brain tissue caused by impaired intracranial blood circulation. It usually presents clinically as an acute...

Nov 4 2022 36899504
A Deep-Learning Framework for the Automated Recognition of Molecules in Scanning-Probe-Microscopy Images.

Computer vision as a subcategory of deep learning tackles complex vision tasks by dealing with data of images. Molecular images with exceptionally hig...

Nov 4 2022 36178779
Multiplexed high-throughput immune cell imaging reveals molecular health-associated phenotypes.

Phenotypic plasticity is essential to the immune system, yet the factors that shape it are not fully understood. Here, we comprehensively analyze immu...

Nov 2 2022 36322666
Uncertainty-informed deep learning models enable high-confidence predictions for digital histopathology.

A model's ability to express its own predictive uncertainty is an essential attribute for maintaining clinical user confidence as computational biomar...

Nov 2 2022 36323656
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