IEEE journal of biomedical and health informatics
Aug 20, 2014
Serum high-density lipoprotein (HDL) and low-density lipoprotein (LDL) cholesterol levels are associated with risk factors for various diseases and are related to anthropometric measures. However, controversy remains regarding the best anthropometric...
RATIONALE AND OBJECTIVES: The objectives are: 1) to introduce a simple and efficient method for extracting region of interest (ROI) values from a Picture Archiving and Communication System (PACS) viewer using optical character recognition (OCR) softw...
As the amount of genome information increases rapidly, there is a correspondingly greater need for methods that provide accurate and automated annotation of gene function. For example, many high-throughput technologies--e.g., next-generation sequenci...
BACKGROUND AND OBJECTIVE: The elucidation of candidate genes is fundamental to comprehending intricate diseases, vital for early diagnosis, personalized treatment, and drug discovery. Traditional Disease Gene Identification methods encounter limitati...
Journal of the American Medical Informatics Association : JAMIA
Jun 1, 2025
OBJECTIVES: Large language models (LLMs) have shown potential in biomedical applications, leading to efforts to fine-tune them on domain-specific data. However, the effectiveness of this approach remains unclear. This study aims to critically evaluat...
Journal of the American Medical Informatics Association : JAMIA
Jun 1, 2025
OBJECTIVES: To develop a corpus annotated for diet-microbiome associations from the biomedical literature and train natural language processing (NLP) models to identify these associations, thereby improving the understanding of their role in health a...
IEEE journal of biomedical and health informatics
Jun 1, 2025
Drug-drug interactions (DDIs) are a significant focus in biomedical research and clinical practice due to their potential to compromise treatment outcomes or cause adverse effects. While deep learning approaches have advanced DDI extraction, challeng...
IEEE journal of biomedical and health informatics
Jun 1, 2025
Computational phenotyping uses data mining methods to extract clusters of clinical descriptors, known as phenotypes, from electronic health records (EHR). Tensor factorization methods are very effective in extracting meaningful patterns and have beco...
IEEE journal of biomedical and health informatics
Jun 1, 2025
The medical literature and records on diabetes provide crucial resources for diabetes prevention and treatment. However, extracting entities from these textual diabetes data is crucial but challenging. Named entity recognition (NER) - an important co...
Database : the journal of biological databases and curation
May 22, 2025
The paper describes our biomedical relation extraction system, which is designed to participate in the BioCreative VIII challenge Track 1: BioRED Track, which emphasizes the relation extraction from biomedical literature. Our system employs an ensemb...