AIMC Topic: Data Mining

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Leveraging Rule-Based NLP to Translate Textual Reports as Structured Inputs Automatically Processed by a Clinical Decision Support System.

Studies in health technology and informatics
Using clinical decision support systems (CDSSs) for breast cancer management necessitates to extract relevant patient data from textual reports which is a complex task although efficiently achieved by machine learning but black box methods. We propos...

Assessment of Follow-Up for Pulmonary Nodules from Radiology Reports with Natural Language Processing.

Studies in health technology and informatics
Radiology reports are an essential communication method for ensuring smooth workflow in healthcare. However, many of these reports are described in free text, and findings documented by radiologists may not be adequately addressed. In this study, foc...

Unsupervised Extraction of Body-Text from Clinical PDF Documents.

Studies in health technology and informatics
Automatic extraction of body-text within clinical PDF documents is necessary to enhance downstream NLP tasks but remains a challenge. This study presents an unsupervised algorithm designed to extract body-text leveraging large volume of data. Using D...

Automatic Extraction of Medication Data from Semi-Structured Prescriptions.

Studies in health technology and informatics
In many healthcare facilities, the prescription of drugs is done only in a semi-structured manner, using free-text fields where various information is often mixed. Therefore, automatic processing, especially for secondary use such as research purpose...

Temporal Characterization and Visualization of Revolving Therapy-Events in Lung Cancer Patients.

Studies in health technology and informatics
This paper presents a comprehensive workflow for integrating revolving events into the transitive sequential pattern mining (tSPM+) algorithm and Machine Learning for Health Outcomes (MLHO) framework, emphasizing best practices and pitfalls in its ap...

From Data Mining of Public Sources to Clinical Decision Support in Personalized Medicine.

Studies in health technology and informatics
Personalized medicine enables precise tumor treatment for a patient's molecular genetic profile. To devise optimal targeted treatment plans for patients in a molecular tumor board, physicians must consider alterations on gene- and proteins levels but...

The overview of the BioRED (Biomedical Relation Extraction Dataset) track at BioCreative VIII.

Database : the journal of biological databases and curation
The BioRED track at BioCreative VIII calls for a community effort to identify, semantically categorize, and highlight the novelty factor of the relationships between biomedical entities in unstructured text. Relation extraction is crucial for many bi...

Development and Validation of a Natural Language Processing Algorithm for Extracting Clinical and Pathological Features of Breast Cancer From Pathology Reports.

JCO clinical cancer informatics
PURPOSE: Electronic health records (EHRs) are valuable information repositories that offer insights for enhancing clinical research on breast cancer (BC) using real-world data. The objective of this study was to develop a natural language processing ...

Unveiling Fall Risk Factors: Nurse-Driven Corpus Development for Natural Language Processing.

Studies in health technology and informatics
Hospital-acquired falls are a continuing clinical concern. The emergence of advanced analytical methods, including NLP, has created opportunities to leverage nurse-generated data, such as clinical notes, to better address the problem of falls. In thi...

Towards discovery: an end-to-end system for uncovering novel biomedical relations.

Database : the journal of biological databases and curation
Biomedical relation extraction is an ongoing challenge within the natural language processing community. Its application is important for understanding scientific biomedical literature, with many use cases, such as drug discovery, precision medicine,...